This is an instruction of predicting translation initiation sites (TISs) using TITER.
Guidance:
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Install scikit-learn (http://scikit-learn.org/) and keras (https://keras.io/) first.
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Edit file paths (e.g., the HOMEPATH) in the scripts based on your settings.
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Unzip data.zip, then put the test data in the data/ folder if you want to predict your own data. Otherwise, directly run codes/titer_test.py to reproduce the results in our paper. Note that all the input data should be formatted in Python's array structure.
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All the trained deep learning models are in the model/ folder.
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Note that a user-friendly online version of TITER is coming soon.
If you have any questions, please feel free to contact me : )