VarIr
Machine learning and computational biology. Targeted protein degradation @ProxygenTx Alumnus of @univieCUBE @OFAI
@ProxygenTxVienna, AT
Pinned Repositories
hub-toolbox-python3
Hubness analysis and removal functions
deepnog
Protein orthologous group assignment with deep learning
phenotrex
Microbial Phenotype Prediction, successor to PICA, implemented with Python 3.7 and scikit-learn
BinSanity
Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation
BiocOncoTK
Bioconductor components for general cancer genomics
cf-ddns
Cloudflare DNS client
copac
COPAC clustering
DeepFam
Deep learning based alignment-free method for protein family modeling and prediction
scikit-hubness
A Python package for hubness analysis and high-dimensional data mining
thundersvm
ThunderSVM: A Fast SVM Library on GPUs and CPUs
VarIr's Repositories
VarIr/scikit-hubness
A Python package for hubness analysis and high-dimensional data mining
VarIr/copac
COPAC clustering
VarIr/BinSanity
Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation
VarIr/BiocOncoTK
Bioconductor components for general cancer genomics
VarIr/cf-ddns
Cloudflare DNS client
VarIr/DeepFam
Deep learning based alignment-free method for protein family modeling and prediction
VarIr/thundersvm
ThunderSVM: A Fast SVM Library on GPUs and CPUs
VarIr/deepnog
Protein orthologous group assignment with deep learning
VarIr/eggnog-mapper
Fast genome-wide functional annotation through orthology assignment
VarIr/hpc-python
Python in High Performance Computing
VarIr/Liftoff
An accurate GFF3/GTF lift over pipeline
VarIr/phenotrex
Microbial Phenotype Prediction, re-implemented with Python 3.7 and scikit-learn
VarIr/puffinn
Parameterless and Universal FInding of Nearest Neighbors
VarIr/puffinn-test
Test puffinn LSH library
VarIr/pyfaidx
Efficient pythonic random access to fasta subsequences
VarIr/pytorch.github.io
The website for PyTorch
VarIr/SALSA
SALSA: A tool to scaffold long read assemblies with Hi-C data
VarIr/scikit-learn
scikit-learn: machine learning in Python
VarIr/scipy
Scipy library main repository
VarIr/scipy-articles
Publications about Scipy
VarIr/selene
a framework for training sequence-level deep learning networks
VarIr/tutorials
PyTorch tutorials.
VarIr/UDSMProt
Protein sequence classification with self-supervised pretraining