VascoElbrecht/JAMP

Issues

• Error in swarm

  #27 opened 3 years ago by michelledesontje
  0

• 20% of reads get discarded in PE merging with Vsearch

  #26 opened 3 years ago by VascoElbrecht
  2

• add option to consider wobbles in map2ref data

  #25 opened 3 years ago by VascoElbrecht
  0

• New versoin will not get fetched by regular install

  #24 opened 3 years ago by DominikBuchner
  1

• Plotting in Cutadapt function breaks the code even if LDist is set to False

  #23 opened 4 years ago by DominikBuchner
  1

• JAMP won't work with up to date cutadapt

  #22 opened 3 years ago by DominikBuchner
  3

• installation

  #21 opened 4 years ago by Kmicaduarte
  1

• cluster ESV results!

  #18 opened 5 years ago by VascoElbrecht
  0

• clustering does not work on 1000+ files due to cat issue

  #17 opened 6 years ago by VascoElbrecht
  0

• Demultiplexing - imput file names

  #13 opened 6 years ago by VascoElbrecht
  1

• Bold_web_hack: Make %tage filtering on below order level

  #8 opened 6 years ago by VascoElbrecht
  3

• sequence count's don't deal with dereplicated data

  #6 opened 6 years ago by VascoElbrecht
  1

• include rarefaction function!

  #4 opened 6 years ago by VascoElbrecht
  1

• make empty folder to drop demultiplexed files in

  #3 opened 6 years ago by VascoElbrecht
  1

• demultiplex into same folder

  #2 opened 6 years ago by VascoElbrecht
  1

• haplotyping issue with OTU subsetting

  #1 opened 6 years ago by VascoElbrecht
  1

• intrigate LULU filtering after clustering

  #7 opened 6 years ago by VascoElbrecht
  1

• Add FastQC analysis

  #11 opened 6 years ago by VascoElbrecht
  2

• Add SRA sequence download function!

  #10 opened 6 years ago by VascoElbrecht
  1

• empty files are not copied when trimming fasta files

  #16 opened 6 years ago by VascoElbrecht
  0

• add options to responde by email, once script is done running

  #14 opened 6 years ago by VascoElbrecht
  0

• U_cluster_otus() crashes if only one file is present

  #12 opened 6 years ago by VascoElbrecht
  0

• Subsampling only works, if the file contains enough reads

  #5 opened 7 years ago by VascoElbrecht
  0