Pinned Repositories
celldive-pipeline
codex-pipeline
CODEX data processing code
segmentations
BaSiC_Mod
biostitch
Image stitcher for Opera Phenix HCS System
image_registrator
Feature based image registration for immunofluorescence images
microaligner
Image registration (alignment) software for large microscopy images
opt_flow_reg
Optical flow based registration for fluorescence microscopy images
pmc_related_articles
Tool for visualization of research papers that have common accession numbers
slice-stitch
Slicer and stitcher for multichannel images
VasylVaskivskyi's Repositories
VasylVaskivskyi/microaligner
Image registration (alignment) software for large microscopy images
VasylVaskivskyi/biostitch
Image stitcher for Opera Phenix HCS System
VasylVaskivskyi/image_registrator
Feature based image registration for immunofluorescence images
VasylVaskivskyi/opt_flow_reg
Optical flow based registration for fluorescence microscopy images
VasylVaskivskyi/pmc_related_articles
Tool for visualization of research papers that have common accession numbers
VasylVaskivskyi/BaSiC_Mod
VasylVaskivskyi/bigstitcher_runner
VasylVaskivskyi/bs_meta
VasylVaskivskyi/bundle
Bundle several images (channels) into one file with OME metadata
VasylVaskivskyi/slice-stitch
Slicer and stitcher for multichannel images
VasylVaskivskyi/cwltool
Common Workflow Language reference implementation
VasylVaskivskyi/extract_channels
VasylVaskivskyi/extract_meta
Application for converting metadata from raw microscopy to OME-XML using Bioformats
VasylVaskivskyi/ingest-validation-tools
HuBMAP data submission guidelines, and tools which check that submissions adhere to those guidelines.
VasylVaskivskyi/Python-for-Signal-Processing
Notebooks for "Python for Signal Processing" book
VasylVaskivskyi/resize
Script to resize big image and stacks
VasylVaskivskyi/segmentations
VasylVaskivskyi/stop-russia-it
An open letter from IT industry specialists to protect Ukraine from information warfare. Відкритий лист спеціалістів IT-індустрії на захист України від інформаційної війни.
VasylVaskivskyi/topic_modelling