Pinned Repositories
.github
Agent-Based-Model-of-NLC-in-CLL
An Agent-Based Model of Monocyte Differentiation into Tumor-Associated Macrophages in Chronic Lymphocytic Leukemia
ChAseR_demo
ChAseR demo
GARDEN-NET
Genome ARchitecture Data Epigenome and Nucleome - Network Exploration Tool (GARDEN-NET)
GEMDeCan
GEMDeCan: Gene expression and methylation based deconvolution for Cancer
GEMDeCan_deconvolution
Snakemake pipeline to perform immune cell type deconvolution in bulk RNAseq data using gene expression and methylation signatures.
Heterosis-GRN-simulation
R code of a gene regulatory network simulation of hybrid vigour
LungPredict1_paper
Profiling the Non-Small Cell Lung Cancer (NSCLC) microenvironment by integrating transcriptomics to uncover potential phenotypic profiles associated to patterns in immune infiltration
Spatial-Omics-Networks-Benchmark-
Spatial Omics Networks Benchmark
tysserand
Fast reconstruction of spatial networks from bioimages.
Vera Pancaldi Lab's Repositories
VeraPancaldiLab/tysserand
Fast reconstruction of spatial networks from bioimages.
VeraPancaldiLab/GARDEN-NET
Genome ARchitecture Data Epigenome and Nucleome - Network Exploration Tool (GARDEN-NET)
VeraPancaldiLab/GEMDeCan
GEMDeCan: Gene expression and methylation based deconvolution for Cancer
VeraPancaldiLab/LungPredict1_paper
Profiling the Non-Small Cell Lung Cancer (NSCLC) microenvironment by integrating transcriptomics to uncover potential phenotypic profiles associated to patterns in immune infiltration
VeraPancaldiLab/Agent-Based-Model-of-NLC-in-CLL
An Agent-Based Model of Monocyte Differentiation into Tumor-Associated Macrophages in Chronic Lymphocytic Leukemia
VeraPancaldiLab/GEMDeCan_deconvolution
Snakemake pipeline to perform immune cell type deconvolution in bulk RNAseq data using gene expression and methylation signatures.
VeraPancaldiLab/ChAseR_demo
ChAseR demo
VeraPancaldiLab/Heterosis-GRN-simulation
R code of a gene regulatory network simulation of hybrid vigour
VeraPancaldiLab/.github
VeraPancaldiLab/Chromatin_Assortativity
VeraPancaldiLab/GARDEN-NET_backend
Set of utilities and helpers for generating json networks in cytoscape.js json format from R dataframes to TSV format in https://github.com/VeraPancaldiLab/GARDEN-NET
VeraPancaldiLab/LungPredict1
Profiling the Non-Small Cell Lung Cancer (NSCLC) microenvironment by integrating transcriptomics to uncover potential phenotypic profiles associated to patterns in immune infiltration
VeraPancaldiLab/mg-process-chas
mg-process-chas for ChAs
VeraPancaldiLab/mosna_3DMERFISH
a fork of mosna stands for multi-omics spatial network analysis
VeraPancaldiLab/Pancreatic-Cancer-Spatial-Network-Analysis
Pancreatic Cancer Network Reconstruction and Analysis
VeraPancaldiLab/RepOri3D
VeraPancaldiLab/Spatial-Omics-Networks-Benchmark-
Spatial Omics Networks Benchmark
VeraPancaldiLab/TRANSDUCER
VeraPancaldiLab/verapancaldilab.github.io
VeraPancaldiLab web
VeraPancaldiLab/Alexis_Hucteau_Thesis_git
VeraPancaldiLab/Gene_Ages_3D_Paper
Exploring the relation between evolutionary gene age, gene expression and chromatin 3D structure in cancer