/firing_rate-cell_size

Testing correlation between neuronal cell size and firing rate set point.

Primary LanguageJupyter Notebook

firing_rate-cell_size

Soma-related

  • ./jupyter_notebooks/neuron_soma_volume.ipynb
    • using swc files, getting individual cells' radius, surface area, and volume of soma, assuming the soma is a sphere. Modified from neuron_volume.ipynb. For future re-use, watch out the deprecated functions regarding getting morphology from swc files with neuro_morphology package and generating dataframe with append function in for loop.
    • generate ./results/soma_volume_et_surface_et_radius.tsv (Oct 16, 2022)