VictorGoitea

VictorGoitea's Stars

• prokischlab/omicsDiagnostics

  This repository contains different scripts to automate and visualize analysis performed for the "Integration of proteomics with genomics and transcriptomics increases the diagnosis rate of Mendelian disorders"

  Language:R4

• ENCODE-DCC/kentUtils

  UCSC command line bioinformatic utilities

  Language:C16895

• liguowang/CrossMap

  CrossMap is a python program to lift over genome coordinates from one genome version to another.

  Language:Python7424

• jernst98/ChromHMM

  Language:Java7518

• samtools/bcftools

  This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

  Language:C674240

• mikelove/awesome-multi-omics

  List of software packages for multi-omics analysis

  728162

• broadinstitute/AwesomeGenomics

  Cancer Data Science's go to place for excellent genomics tools and packages

  276

• broadinstitute/2019_scWorkshop

  Repo for Physalia course Analysis of Single Cell RNA-Seq data

  Language:TeX3118

• broadinstitute/gtex-pipeline

  GTEx & TOPMed data production and analysis pipelines

  Language:Python342174

• broadinstitute/pilon

  Pilon is an automated genome assembly improvement and variant detection tool

  Language:Scala34160

• broadinstitute/infercnv

  Inferring CNV from Single-Cell RNA-Seq

  Language:R564166

• broadinstitute/picard

  A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

  Language:Java983369

• broadinstitute/TAG-public

  Official workflows published by the Broad Institute's Genomics Platform Translation Analysis Group (TAG)

  Language:WDL52

• broadinstitute/depmap_omics

  What you need to process the Quarterly DepMap-Omics releases from Terra

  Language:HTML11022

• broadinstitute/gatk

  Official code repository for GATK versions 4 and up

  Language:Java1.7k591

• broadinstitute/str-analysis

  Scripts and utilities related to analyzing short tandem repeats (STRs).

  Language:Python308

• dougspeed/LDAK

  Language:C121

• fizwit/easy_update

  Update EasyBuild package configuration files for R and Python bundles

  Language:Python199

• hds-sandbox/NGS_summer_course_Aarhus

  Repository for the NGS summer course at Aarhus university

  Language:Jupyter Notebook63

• kundajelab/phantompeakqualtools

  This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to obtain robust estimates of the predominant fragment length or characteristic tag shift values in these assays.

  Language:R5417

• jokergoo/simplifyEnrichment

  Simplify functional enrichment results

  Language:R10917

• YuLab-SMU/clusterProfiler

  :bar_chart: A universal enrichment tool for interpreting omics data

  Language:R1k256

• YuLab-SMU/DOSE

  :mask: Disease Ontology Semantic and Enrichment analysis

  Language:R11736

• YuLab-SMU/ReactomePA

  Reactome Pathway Analysis

  Language:R3710

• YuLab-SMU/GOSemSim

  :golf: GO-terms Semantic Similarity Measures

  Language:R5926

• YuLab-SMU/meshes

  :stethoscope: MeSH Enrichment and Semantic analyses

  Language:R114

• YuLab-SMU/ChIPseeker

  :dart: ChIP peak Annotation, Comparison and Visualization

  Language:R22474

• jokergoo/rGREAT

  GREAT Analysis - Functional Enrichment on Genomic Regions

  Language:R8513

• igvteam/igv

  Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

  Language:Java644387

• readthedocs-examples/awesome-read-the-docs

  A curated list of awesome Read the Docs projects

  1397