/GeoAviR

Calling Distance 6.2 MCDS engine via R

Primary LanguageRGNU General Public License v2.0GPL-2.0

GeoAviR

The package allows the user to create spatial grids, plot the observed animal density and run some basic distance analysis via the MCDS engine of Distance 6.2.

Version 0.8.3

  • Fixed a bug in the strip transect function

Version 0.8.2

  • Improved the vignettes
  • Anonymised the alcidae database

Version 0.8.1

  • Made changes to the vignettes
  • Changed the example in distance.wrap
  • Added code to foolproof the inputs of distance.wrap

Version 0.8.0

  • Added a vignette for model with covariates
  • Added a vignette for simple models
  • Added a vignette for stratified analysis
  • Added the keep.best.model function to simplify output when many model are fitted to the same species
  • Made cosmetic changes to the print and summary functions for the distanceList and distanceFit class
  • Created the SpeciesList class
  • Redefined the distanceList class
  • Added the units options to distance.wrap
  • Made extensive change to distance.wrap to make sure each model is estimated independently

Version 0.7.2

  • Simplifed the help of distance.wrap
  • Added the names of the covariates to the print.summary function
  • Added the names of the covariates to the distance.wrap output
  • Created a function to extract the names of the covariates in the distance output

Version 0.7.1

  • Created the strip.wrap function to perform strip.transects analysis
  • Made modifications to distance.wrap to allow the usage of explanatory variables to compute detection functions
  • Made extensive modifications to distance.wrap to improve rare species estimation
  • Added a function to extract information about the cluster size estimaton by distance.wrap
  • Improved the print and summary functions for the distanceFit objects
  • Created distanceList class
  • Added print and summary functions for the distanceList objects

Version 0.7.0

  • hist.wrap now use ggplot2 to make the distance histogram
  • all unmarked dependency were deleted
  • MCDS functions output are now numeric
  • resume.plot is deprecated
  • Global.summary replace resume.plot
  • distance.wrap output has been modified to accomodate change for Global.summary
  • ECSASfilter and Distancefilter bugs have been fixed
  • Added print and summary function for distanceFit objects