Vini2
Research Associate in Bioinformatics at the Flinders Accelerator for Microbiome Exploration, Flinders University
Flinders UniversityAdelaide, Australia
Pinned Repositories
ConDiGA
🗂️🧬 Contigs directed gene annotation for accurate protein sequence database construction in metaproteomics
GraphBin
✨🧬 Refined binning of metagenomic contigs using assembly graphs
GraphBin2
☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs
MetaCoAG
🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs
ParallelMatrixMultiplicationUsingOpenMP
Parallel Matrix Multiplication Using OpenMP
phables
🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes
reneo
🦠🧬 Unraveling Viral Genomes from Metagenomes
Vini2's Repositories
Vini2/phables
🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes
Vini2/reneo
🦠🧬 Unraveling Viral Genomes from Metagenomes
Vini2/my-bioinformatics-scripts
Scripts that I need to work with bioinformatics data
Vini2/Nektool
Cookiecutter profile for making a NextFlow-based bioinformatics tool
Vini2/CheckS
Checking the presence of a species in a metagenomics sample with known taxonomic composition
Vini2/CodeForMediumArticles
Code snippets and Jupyter Notebooks for my Medium Articles
Vini2/distribin
Distributed metagenomic binning
Vini2/agtools
Tools for manipulating assembly graphs
Vini2/bioconda-recipes
Conda recipes for the bioconda channel.
Vini2/Bioinfo_K_mers
Compare k-mers of Biological Data
Vini2/CFHackathon2023
The CF Hackathon, 2023
Vini2/Change-Detection-And-Notification-Visualization-Service
Change Detection And Notification Visualization Service
Vini2/cogent3
Comparative Genomics Toolkit 3
Vini2/ComputationalGenomicsManual
Robs manual for the computational genomics and bioinformatics class.
Vini2/dnaapler
Reorients assembled microbial sequences
Vini2/flindersfame.github.io
The FAME Website
Vini2/hecatomb
hecatomb is a virome analysis pipeline for analysis of Illumina sequence data
Vini2/KitchenHunt
Kitchen Hunt: Recipe Search with Ingredients in your Kitchen
Vini2/Koverage
Quickly get coverage statistics given reads and an assembly
Vini2/MyProjectEulerSolutions
This project contains the solutions for some of the problems in Project Euler
Vini2/pacer-hackathon-2023
PaCER Hackathon 2023 documentation and attendee guide
Vini2/phage-genomes
Phage genome assembly and annotation
Vini2/Phicore
work in progress. but got to do with phage genomes because they are awesome!
Vini2/phold
Phage Annotation using Protein Structures
Vini2/Phynteny
Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny
Vini2/scitrack
library aimed at scientists who want a simple tool to help log research computations
Vini2/Snaketool
Cookiecutter profile for making a Snakemake-based bioinformatics tool, but without the fluff
Vini2/sphae
NEW!!! Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!
Vini2/tutorial-template
Template for the Read the Docs tutorial
Vini2/Vini2
My personal repository