Vini2

Research Associate in Bioinformatics | PhD in Computer Science

Flinders UniversityAdelaide, Australia

Pinned Repositories

ConDiGA
🗂️🧬 Contigs directed gene annotation for accurate protein sequence database construction in metaproteomics
Language:Python5 2 11
GraphBin
✨🧬 Refined binning of metagenomic contigs using assembly graphs
Language:Python89 1 347
GraphBin2
☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs
Language:Python33 3 213
MetaCoAG
🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs
Language:Python59 1 395
my-bioinformatics-scripts
Scripts that I need to work with bioinformatics data
Language:Python4 1 00
ParallelMatrixMultiplicationUsingOpenMP
Parallel Matrix Multiplication Using OpenMP
Language:C++4 2 02
phables
🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes
Language:Python74 2 446
reneo
🦠🧬 Unraveling Viral Genomes from Metagenomes
Language:Python10 1 72

Vini2's Repositories

Vini2/phables
🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes
Language:Python74 2 446
Vini2/reneo
🦠🧬 Unraveling Viral Genomes from Metagenomes
Language:Python10 1 72
Vini2/my-bioinformatics-scripts
Scripts that I need to work with bioinformatics data
Language:Python4 1 00
Vini2/Nektool
Cookiecutter profile for making a NextFlow-based bioinformatics tool
Language:Python2 0 0
Vini2/CheckS
Checking the presence of a species in a metagenomics sample with known taxonomic composition
Language:Python1 1 0
Vini2/CodeForMediumArticles
Code snippets and Jupyter Notebooks for my Medium Articles
Language:Jupyter Notebook1 1 10
Vini2/distribin
Distributed metagenomic binning
Language:Python1 1 0
Vini2/agtools
Tools for manipulating assembly graphs
Language:Python1 0
Vini2/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell0 0
Vini2/Bioinfo_K_mers
Compare k-mers of Biological Data
Language:Python1 0
Vini2/CFHackathon2023
The CF Hackathon, 2023
0 0
Vini2/Change-Detection-And-Notification-Visualization-Service
Change Detection And Notification Visualization Service
Language:TypeScript2 0
Vini2/cogent3
Comparative Genomics Toolkit 3
Language:Python0 0
Vini2/ComputationalGenomicsManual
Robs manual for the computational genomics and bioinformatics class.
Vini2/dnaapler
Reorients assembled microbial sequences
Language:Python0 0
Vini2/flindersfame.github.io
The FAME Website
Language:JavaScript0 0
Vini2/hecatomb
hecatomb is a virome analysis pipeline for analysis of Illumina sequence data
Language:Python0 0
Vini2/KitchenHunt
Kitchen Hunt: Recipe Search with Ingredients in your Kitchen
Language:Java1 02
Vini2/Koverage
Quickly get coverage statistics given reads and an assembly
Language:Python0 0
Vini2/MyProjectEulerSolutions
This project contains the solutions for some of the problems in Project Euler
Language:C1 0
Vini2/pacer-hackathon-2023
PaCER Hackathon 2023 documentation and attendee guide
0 0
Vini2/phage-genomes
Phage genome assembly and annotation
Language:Jupyter Notebook0 0
Vini2/Phicore
work in progress. but got to do with phage genomes because they are awesome!
Language:Jupyter Notebook0 0
Vini2/phold
Phage Annotation using Protein Structures
Language:Python0 0
Vini2/Phynteny
Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny
Language:Python0 0
Vini2/scitrack
library aimed at scientists who want a simple tool to help log research computations
Language:Python0 0
Vini2/Snaketool
Cookiecutter profile for making a Snakemake-based bioinformatics tool, but without the fluff
Language:Python0 0
Vini2/sphae
NEW!!! Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!
Language:Python0 0
Vini2/tutorial-template
Template for the Read the Docs tutorial
Language:Python0 0
Vini2/Vini2
My personal repository
1 0