ViralRen

ViralRen's Stars

• hodcroftlab/covariants

  Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.

  Language:Python316111

• cov-lineages/pangolin

  Software package for assigning SARS-CoV-2 genome sequences to global lineages.

  Language:Python427107

• neherlab/treetime

  Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction

  Language:Jupyter Notebook22555

• ssadedin/bazam

  A read extraction and realignment tool for next generation sequencing data

  Language:Groovy9916

• trinityrnaseq/trinityrnaseq

  Trinity RNA-Seq de novo transcriptome assembly

  Language:Perl834320

• beagle-dev/beagle-lib

  general purpose library for evaluating the likelihood of sequence evolution on trees

  Language:C++13157

• nextstrain/augur

  Pipeline components for real-time phylodynamic analysis

  Language:Python268129

• nextstrain/auspice

  Web app for visualizing pathogen evolution

  Language:JavaScript292162

• chiulab/surpi

  SURPI

  Language:Shell8247

• weizhongli/cdhit

  Automatically exported from code.google.com/p/cdhit

  Language:Perl641129

• matsen/pplacer

  Phylogenetic placement and downstream analysis

  Language:OCaml7518

• rega-cev/phylogeotool

  Language:Java43

• biologyguy/BuddySuite

  Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files

  Language:Python12323

• jeetsukumaran/DendroPy

  A Python library for phylogenetic scripting, simulation, data processing and manipulation.

  Language:Python20762

• blab/mers-structure

  MERS-CoV spillover at the camel-human interface

  Language:Jupyter Notebook73

• bbuchfink/diamond

  Accelerated BLAST compatible local sequence aligner.

  Language:C++1k182

• williamgilpin/pypdb

  A Python API for the RCSB Protein Data Bank (PDB)

  Language:Python30975

• blab/baltic

  baltic - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. This fork will no longer receive updates, so any further development to baltic is going to happen at https://github.com/evogytis/baltic.

  Language:Jupyter Notebook126

• ebov/space-time

  Analysis of EBOV genome sequence from Guinea, Sierra Leone and Liberia from 2014-2016

  Language:Jupyter Notebook5819