Course website for CSE 185 Spring 2018
| Week | Date | Topic | Assignment Link | Slides |
|---|---|---|---|---|
| 1 | 04/02/2018 | Lab 1: What causes antibiotic resistance? NGS, sequence alignment, variant calling |
Part I PDF Lab 1 Github Week 1 Reading |
Week 1 - Monday Week 1 - Wednesday Bonus slides - short read alignment |
| 2 | 04/09/2018 | Lab 2: I got vaccinated, why did I get the flu?! More NGS, error control |
Lab 2 Github Week 2 Reading |
Week 2 - Monday Week 2 - Wednesday |
| 3 | 04/16/2018 | Lab 3: So where do all those reference genomes come from, anyway? Genome assembly |
Lab 3 Github Week 3 Reading |
Week 3 - Monday Week 3 - Wednesday |
| 4 | 04/23/2018 | Lab 4: Why don’t snakes have legs? Comparative genomics, RNA-seq |
Lab 4 Github Week 4 Reading |
Week 4 - Monday Week 4 - Wednesday |
| 5 | 04/30/2018 | Lab 5: What color should my eyes be? GWAS, big data |
Lab 5 Github Week 5 Reading |
Week 5 - Monday Week 5 - Wednesday |
| 6 | 05/07/2018 | Lab 6: CSI Proteomics Proteomics |
Lab 6 Github Week 6 Reading |
Week 6 - Monday Week 6 - Wednesday Week 6 - Wednesday audio+slides (youtube) |
| 7 | 05/14/2018 | Bioinformatics in the real world Primary literature review, software installation, data access |
Literature Review Github | Week 7 - Wednesday |
| 8 | 05/21/2018 | Independent Projects | Final Projects Github | Week 8 - Monday Week 8 - Wednesday |
| 9 | 05/28/2018 | Independent Projects | ||
| 10 | 06/04/2018 | Independent Projects |