Virtual Fly Brain

a data integrator for Drosophila neurobiology

Pinned Repositories

DrosAdultBRAINdomains
Drosophila Adult Brain Domains
14 5 78
DrosAdultHalfBRAINdomains
Domains from confocal serial section image data used for the study "A Systematic Nomenclature for the Insect Brain" Kei Ito, et al.
4 6 46
DrosAdultVNSdomains
Drosophila Adult Ventral Nervous System Domains
Language:Jupyter Notebook2 9 01
geppetto-vfb
VFB (v2) application
Language:JavaScript3 10 4971
neo4j2owl
Semantics preserving mapping of OWL 2 EL and Neo4J. Under development, do not use.
Language:Java6 4 504
training
Repository for training notebooks
Language:Jupyter Notebook4 6 02
VFB
Virtual Fly Brain
Language:HTML16 10 2995
VFB2
Virtual Fly Brain Documentation Site
Language:HTML5 13 3016
VFB_connect
A library for querying VFB servers (neo4j, owlery, solr)
Language:Jupyter Notebook4 6 611
VFB_owl
A repository for VFB owl files and the code that generates them
Language:Python2 5 451

Virtual Fly Brain's Repositories

VirtualFlyBrain/neo4j2owl
Semantics preserving mapping of OWL 2 EL and Neo4J. Under development, do not use.
Language:Java6 4 504
VirtualFlyBrain/VFB2
Virtual Fly Brain Documentation Site
Language:HTML5 13 3016
VirtualFlyBrain/VFB_connect
A library for querying VFB servers (neo4j, owlery, solr)
Language:Jupyter Notebook4 6 611
VirtualFlyBrain/geppetto-vfb
VFB (v2) application
Language:JavaScript3 10 4971
VirtualFlyBrain/pipeline
A repository for amalgamating pipeline issue tickets and general VFB pipeline doc
Language:Shell1 7 70
VirtualFlyBrain/VFB_reporting_results
Repository containing the results of various data change and consistency checking.
Language:Python1 2 3
VirtualFlyBrain/curation
A repository of records specifying curation into the VFB Knowledge Base
Language:Python7 56
VirtualFlyBrain/Docker-VFB-Neo4j
Basic Neo4J instance setup for VFB
Language:Dockerfile6 0
VirtualFlyBrain/jupyterhub
wrapper with github Oauth
5 0
VirtualFlyBrain/org.geppetto.frontend
Geppetto frontend bundle (Web Application)
Language:JavaScript7 0
VirtualFlyBrain/owltools
OWLTools
Language:Web Ontology Language6 0
VirtualFlyBrain/SOLR_sideloader
Pass data directly from PDB to SOLR server
Language:Dockerfile6 0
VirtualFlyBrain/uk.ac.vfb.geppetto
Virtual Fly Brain geppetto code
Language:Java6 231
VirtualFlyBrain/vfb-driver-ontology
Language:Makefile6 3
VirtualFlyBrain/vfb-extension-ontology
A small application ontology used by VFB.
Language:Makefile6 1
VirtualFlyBrain/vfb-neurotransmitter-predictions
Neurotransmitter predictions and confidence values for VFB individuals. Data taken from neuprint.
Language:Makefile5 0
VirtualFlyBrain/vfb-pipeline-collectdata
Language:Shell5 12
VirtualFlyBrain/vfb-pipeline-dumps
Pipeline that creates dumps from the triplestore for consumption by the downstream services
Language:Python
VirtualFlyBrain/vfb-pipeline-polishing
Final cypher steps after complete pipeline load
Language:Python5 1
VirtualFlyBrain/vfb-pipeline-update-prod
Language:Shell5 3
VirtualFlyBrain/vfb-prod
Language:Shell4 5
VirtualFlyBrain/vfb-scRNAseq-gene-annotations
Language:Makefile4 7
VirtualFlyBrain/vfb-scRNAseq-ontology
An ontology of Drosophila melanogaster scRNAseq data pulled from FlyBase.
Language:Makefile5 10
VirtualFlyBrain/VFB_connect_api
API wrapping VFB_connect library
Language:Python5 2
VirtualFlyBrain/VFB_connectomics_import
A project to produce RDF/OWL representations of connectomics data for import to the VFB integration layer triple store.
Language:Python7 10
VirtualFlyBrain/vfb_expression_annotator
VFB Expression Annotator tags classes based on the VFB clas expression config
Language:Java6 0
VirtualFlyBrain/VFB_json_schema
VFB json schema spec + code for rolling queries producing VFB json schema + related integration tests
Language:Python6 80
VirtualFlyBrain/VFB_neo4j
A python package for writing schema-compliant content to VFB neo4J DBs
Language:Python4 1781
VirtualFlyBrain/VFB_reporting
Scripts for reporting on the state of VFB content and pipeline
Language:Jupyter Notebook2 29
VirtualFlyBrain/vfb_rest
Language:HTML2 1