Virtual Fly Brain

a data integrator for Drosophila neurobiology

Pinned Repositories

DrosAdultBRAINdomains
Drosophila Adult Brain Domains
14 5 78
DrosAdultHalfBRAINdomains
Domains from confocal serial section image data used for the study "A Systematic Nomenclature for the Insect Brain" Kei Ito, et al.
4 6 47
DrosAdultVNSdomains
Drosophila Adult Ventral Nervous System Domains
Language:Jupyter Notebook2 9 01
geppetto-vfb
VFB (v2) application
Language:JavaScript3 10 4971
neo4j2owl
Semantics preserving mapping of OWL 2 EL and Neo4J. Under development, do not use.
Language:Java6 4 504
training
Repository for training notebooks
Language:Jupyter Notebook5 6 03
VFB
Virtual Fly Brain
Language:HTML16 10 2995
VFB2
Virtual Fly Brain Documentation Site
Language:Python6 13 3036
VFB_connect
A library for querying VFB servers (neo4j, owlery, solr)
Language:Jupyter Notebook5 6 621
VFB_owl
A repository for VFB owl files and the code that generates them
Language:Python2 5 451

Virtual Fly Brain's Repositories

VirtualFlyBrain/VFB2
Virtual Fly Brain Documentation Site
Language:Python6 13 3036
VirtualFlyBrain/VFB_connect
A library for querying VFB servers (neo4j, owlery, solr)
Language:Jupyter Notebook5 6 621
VirtualFlyBrain/geppetto-vfb
VFB (v2) application
Language:JavaScript3 10 4971
VirtualFlyBrain/pipeline
A repository for amalgamating pipeline issue tickets and general VFB pipeline doc
Language:Shell1 7 70
VirtualFlyBrain/VFB_reporting_results
Repository containing the results of various data change and consistency checking.
Language:Python1 2 30
VirtualFlyBrain/BrainTrap
BrainTrap is a database of 3D protein expression patterns in the Drosophila brain, providing interactive visualization and exploration of confocal datasets showing reporter gene expression and protein localization.
Language:CSS0 5 01
VirtualFlyBrain/curation
A repository of records specifying curation into the VFB Knowledge Base
Language:Python0 7 560
VirtualFlyBrain/Docker-VFB-Neo4j-ProductionDB
Neo4j server loaded with the VFB Production DB
Language:Dockerfile6 0
VirtualFlyBrain/europmc_crawler
A repository for downloading VFB related papers from the europmc
Language:R6 0
VirtualFlyBrain/neuPrint
tools for importing connectome data into neo4j
Language:Java2 0
VirtualFlyBrain/org.geppetto.frontend
Geppetto frontend bundle (Web Application)
Language:JavaScript7 0
VirtualFlyBrain/owltools
OWLTools
Language:Web Ontology Language5 0
VirtualFlyBrain/uk.ac.vfb.geppetto
Virtual Fly Brain geppetto code
Language:Java6 231
VirtualFlyBrain/vfb-data-ingest-api
This repository contains the REST API code for the Data Ingest API
Language:Python8 13
VirtualFlyBrain/vfb-driver-ontology
Language:Makefile6 3
VirtualFlyBrain/vfb-EPseq-ontology
Language:Makefile5 0
VirtualFlyBrain/vfb-extension-ontology
A small application ontology used by VFB.
Language:Makefile6 1
VirtualFlyBrain/vfb-neurotransmitter-predictions
Neurotransmitter predictions and confidence values for VFB individuals. Data taken from neuprint.
Language:Makefile5 0
VirtualFlyBrain/vfb-pipeline-collectdata
Language:Shell5 12
VirtualFlyBrain/vfb-pipeline-dumps
Pipeline that creates dumps from the triplestore for consumption by the downstream services
Language:Python3 27
VirtualFlyBrain/vfb-pipeline-integration-api
Language:Python8 4
VirtualFlyBrain/vfb-pipeline-polishing
Final cypher steps after complete pipeline load
Language:Python5 1
VirtualFlyBrain/vfb-scRNAseq-gene-annotations
Language:Makefile4 7
VirtualFlyBrain/vfb-scRNAseq-ontology
An ontology of Drosophila melanogaster scRNAseq data pulled from FlyBase.
Language:Makefile5 10
VirtualFlyBrain/VFB_connect_api
API wrapping VFB_connect library
Language:Python5 2
VirtualFlyBrain/VFB_neo4j
A python package for writing schema-compliant content to VFB neo4J DBs
Language:Python4 1781
VirtualFlyBrain/VFB_reporting
Scripts for reporting on the state of VFB content and pipeline
Language:Jupyter Notebook2 29
VirtualFlyBrain/vfb_rest
Language:HTML2 1
VirtualFlyBrain/VFBquery
Language:Python8 6
VirtualFlyBrain/virtual-fly-brain
VFB v3 development