Pinned Repositories
ChIP-seq-analysis
ChIP-seq analysis notes from Ming Tang
CoolBox
Jupyter notebook based genomic data visualization toolkit.
DNA-methylation-analysis
DNA methylation analysis notes from Ming Tang
gert
Simple git client for R
HiC_tools
A collection of tools for Hi-C data analysis
learn-python
📚 Playground and cheatsheet for learning Python. Collection of Python scripts that are split by topics and contain code examples with explanations.
pandas-cookbook
Recipes for using Python's pandas library
pyflow-RNAseq
RNAseq pipeline based on snakemake
RNA-seq-analysis
RNAseq analysis notes from Ming Tang
TADbit
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models
WANGchuang715's Repositories
WANGchuang715/TADbit
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models
WANGchuang715/ChIP-seq-analysis
ChIP-seq analysis notes from Ming Tang
WANGchuang715/CoolBox
Jupyter notebook based genomic data visualization toolkit.
WANGchuang715/DNA-methylation-analysis
DNA methylation analysis notes from Ming Tang
WANGchuang715/gert
Simple git client for R
WANGchuang715/HiC_tools
A collection of tools for Hi-C data analysis
WANGchuang715/learn-python
📚 Playground and cheatsheet for learning Python. Collection of Python scripts that are split by topics and contain code examples with explanations.
WANGchuang715/pandas-cookbook
Recipes for using Python's pandas library
WANGchuang715/pyflow-RNAseq
RNAseq pipeline based on snakemake
WANGchuang715/RNA-seq-analysis
RNAseq analysis notes from Ming Tang