ValueError: math domain error

[mzwaig]

Hello,

I've ran your tool on many samples without issue but I'm now getting this error message for one sample and I'm not sure why.

Any ideas would be appreciated.

Thanks,
Melissa

Traceback (most recent call last):
  File "/lb/project/tools/LinkedSV/linkedsv.py", line 313, in <module>
    main()
  File "/lb/project/tools/LinkedSV/linkedsv.py", line 50, in main
    detect_decreased_barcode_overlap(args, dbo_args, endpoint_args)
  File "/lb/project/tools/LinkedSV/linkedsv.py", line 164, in detect_decreased_barcode_overlap
    cal_expected_overlap_value.cal_expected_overlap_bcd_cnt(dbo_args.bcd12_file, dbo_args.bcd13_file, is_wgs)
  File "/lb/project/tools/LinkedSV/scripts/cal_expected_overlap_value.py", line 124, in cal_expected_overlap_bcd_cnt
    predict_overlap_bcd_cnt(bcd12_file, out_file, a, b, alpha, logn, min_m1_value, min_m2_value, max_m1_value, max_m2_value, Y_percentile_array, bk_list, c, Y_mean, Y_std_r, Y_std_l, n_window_pairs)
  File "/lb/project/tools/LinkedSV/scripts/cal_expected_overlap_value.py", line 172, in predict_overlap_bcd_cnt
    Y = math.log(predicted_n_ovl_bcd / float(m0), 2)
ValueError: math domain error

[fangli80]

Hi Melissa,
Sorry for the late reply. This issue has been solved in a recent commit. Please clone the latest version.
Best,
Li