Pinned Repositories
biocluster
Tutorial on building a computing cluster for bioinformatics
Bioformer
Bioformer: an efficient BERT model for biomedical text mining
DeepMod
DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications
doc-ANNOVAR
Documentation for the ANNOVAR software
dragonstar2019
InterVar
A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline
NanoCaller
Variant calling tool for long-read sequencing data
PennCNV
Copy number vaiation detection from SNP arrays
phenolyzer
phenotype-based prioritization of candidate genes for human diseases
VirTect
Detection of viruses from RNA-Seq on human samples
Wang Genomics Lab's Repositories
WGLab/doc-ANNOVAR
Documentation for the ANNOVAR software
WGLab/InterVar
A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline
WGLab/NanoCaller
Variant calling tool for long-read sequencing data
WGLab/PennCNV
Copy number vaiation detection from SNP arrays
WGLab/biocluster
Tutorial on building a computing cluster for bioinformatics
WGLab/VirTect
Detection of viruses from RNA-Seq on human samples
WGLab/LIQA
Long-read Isoform Quantification and Analysis
WGLab/EHR-Phenolyzer
A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list
WGLab/DeepMod2
DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads
WGLab/LinkedSV
WGLab/GenGen
A set of software tools to facilitate GWAS analysis
WGLab/NanoRepeat
NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data
WGLab/PhenoSV
PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.
WGLab/PhenoGPT
WGLab/mutformer
A transformer model to predict pathogenic mutations
WGLab/DELongSeq
WGLab/PhenCards
Development of phencards.org web server for one stop shop of phenotype information
WGLab/LongReadSum
WGLab/Project_Belka
WGLab/QuantitativeGenomics2023
Materials for Quantitative Genomics 2023 workshop
WGLab/ContextSV
An alignment-based, generalized structural variant caller for long-read sequencing/mapping data
WGLab/GestaltMML
WGLab/Gene-Fusion-Detection-Pipeline-LRS
The Gene Fusion (GF) Detection Pipeline is comprehensive bioinformatics workflow designed for Oxford Nanopore long-read sequencing data.
WGLab/Integer_divsibility
WGLab/LINE-Expression-LRS
Bioinformatics pipeline for the identification and quantification of active, full-length Long INterspersed Elements (LINEs)
WGLab/PhenoSS
WGLab/QuantitativeGenomics2024
Materials for Quantitative Genomics 2024 workshop
WGLab/Reversal_Curse
WGLab/SCOTCH
Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single-cell RNA sequencing
WGLab/SCOTCH_reproduction
Reproduction instruction for SCOTCH manuscript