WGLab/NanoCaller

Issues

• indels

  #46 opened 5 months ago by RafaFariasVarona
  3

• keras import issue by conda install

  #47 opened 5 months ago by xuejinghub
  0

• Applications

  #45 opened 8 months ago by QuentinPerriere
  12

• Error phasing large chromosomes (550mb chromosome) due to inability to store as tbi index

  #44 opened 8 months ago by jcolicchio-soundag
  3

• Module not found tqtm after install with conda

  #43 opened 10 months ago by RxLoutre
  1

• Models for R10.4.1 dorado

  #42 opened a year ago by mbhall88
  0

• conda install incompatibilities

  #41 opened a year ago by jannafierst
  2

• Supporting reads

  #40 opened a year ago by jamesdalg
  3

• docker build fails due to missing NanoCaller_WGS file

  #30 opened a year ago by sbassi
  2

• bcf tools error and error in whatshap

  #29 opened 2 years ago by kprabhu-soundag
  4

• TypeError

  #39 opened a year ago by mansi-aai
  2

• AD (allelic depth) field

  #38 opened a year ago by jamesdalg
  5

• Unnormal results !

  #37 opened 2 years ago by AzizHN
  8

• header error in variant_calls.snps.phrased.vcf.gz

  #36 opened 2 years ago by AzizHN
  6

• what do you want to fill in the “--chrom” option? I read the instructions and there is no document.

  #35 opened 2 years ago by oranges7
  22

• High coverage genotyping outputs only G

  #27 opened 3 years ago by rhinempi
  10

• bam file issue!

  #34 opened 2 years ago by g-s-2018
  0

• Failed installation

  #33 opened 2 years ago by twesigomwedavid
  2

• multisample SNP calling?

  #21 opened 3 years ago by colindaven
  7

• Using NanoCaller with BED files and Indel Calling Gives Empty VCF files

  #28 opened 3 years ago by hkarakurt8742
  3

• Models compatible with Guppy6.x.x

  #31 opened 2 years ago by sagnikbanerjee15
  1

• NanoCaller for microbial genomes

  #26 opened 3 years ago by rhinempi
  0

• index file .fai error

  #25 opened 3 years ago by Meirom-Michal
  2

• The output data is now only an args file (previously several vcf files were generated).

  #24 opened 3 years ago by erarin
  0

• Link to HiFi trained models

  #22 opened 3 years ago by bbalog87
  2

• AttributeError: tuple object has no attribute ndims

  #23 opened 3 years ago by bbalog87
  1

• ONT Indel calling on polyploid plant

  #20 opened 3 years ago by HenrivdGeest
  0

• "-phase_bam" doesn't work

  #18 opened 3 years ago by moeinzadeh
  1

• Error: Resource temporarily unavailable

  #17 opened 3 years ago by huangnengCSU
  4

• provide the pre-trained model in other websites

  #19 opened 3 years ago by huangnengCSU
  2

• Calling on chromosome X

  #14 opened 3 years ago by Akazhiel
  1

• failed log report

  #16 opened 3 years ago by aguygarner
  2

• Runtime

  #15 opened 3 years ago by Akazhiel
  7

• Upgrade model to tensorflow 2

  #13 opened 4 years ago by Akazhiel
  1

• Fail to do variant calling

  #10 opened 4 years ago by PanZiwei
  15

• info required on duplicate reads

  #11 opened 4 years ago by tahashmi
  6

• ls: cannot access '/output/intermediate_files/*/*snps.vcf.gz': No such file or directory

  #12 opened 4 years ago by KewinOgink
  5

• Low F1 score for NA12878

  #8 opened 4 years ago by illarionovaanastasia
  11

• AttributeError: module 'tensorflow' has no attribute 'contrib'

  #9 opened 4 years ago by pvap3
  2

• Not calling variant present in bam

  #7 opened 4 years ago by Mailinnia
  2

• extract whole genome SNP and haplotype

  #6 opened 4 years ago by qiang-huang
  3

• Issue --end flag resquested in whole alignment Nanocaller

  #5 opened 4 years ago by AG-Run
  6

• NANOCALLER WITH NANOPORE BACTERIA READS

  #2 opened 5 years ago by vappiah
  2

• usage information

  #1 opened 6 years ago by kaichop
  4

• ValueError: invalid literal for int() with base 10: ''

  #3 opened 4 years ago by MarleyCodes
  1