Pinned Repositories
2021-modle-paper-001-data-analysis
Data analysis code for: "MoDLE: High-performance stochastic modeling of DNA loop extrusion interactions": https://doi.org/10.1186/s13059-022-02815-7
BIGKnock
R package of performing biobank-scale gene-based association test via knockoffs.
CNVScope
CNVScope: Visually Exploring Copy Number Aberrations in Cancer Genomes
cnvscope.github.io
CNVScope Vignette pages
CNVScope_public_data
HiClink
HiClink: a scalable, flexible, robust framework for HiC data
HiCNV
hmftools
Various algorithms for analysing genomics data
jamesdalg's Repositories
jamesdalg/CNVScope
CNVScope: Visually Exploring Copy Number Aberrations in Cancer Genomes
jamesdalg/hmftools
Various algorithms for analysing genomics data
jamesdalg/2021-modle-paper-001-data-analysis
Data analysis code for: "MoDLE: High-performance stochastic modeling of DNA loop extrusion interactions": https://doi.org/10.1186/s13059-022-02815-7
jamesdalg/BIGKnock
R package of performing biobank-scale gene-based association test via knockoffs.
jamesdalg/cnvscope.github.io
CNVScope Vignette pages
jamesdalg/CNVScope_public_data
jamesdalg/CollepardoLab_Chromatin_Model
Source code for "Nucleosome plasticity is a critical element of chromatin liquid–liquid phase separation and multivalent nucleosome interactions".
jamesdalg/drat
jamesdalg/HiClink
HiClink: a scalable, flexible, robust framework for HiC data
jamesdalg/HiCNV
jamesdalg/duet
SNP-Assisted SV Calling and Phasing Using ONT
jamesdalg/glmgen
Generalized lasso implementations
jamesdalg/Goldfeld_EPIC_methylation_array_analysis
Project repository for Goldfeld_EPIC_methylation_array_analysis
jamesdalg/GS3DKViz
jamesdalg/IntegratedLearner
Integrated Machine Learning for Multi-omics Classification and Prediction
jamesdalg/jamesdalg.github.io
jamesdalg/lecture2
jamesdalg/libwacom
libwacom is a tablet description library
jamesdalg/mdanalysis
MDAnalysis is a Python library to analyze molecular dynamics simulations.
jamesdalg/mm2-ax
jamesdalg/MrTADFinder
a method to identify TADs in Hi-C data
jamesdalg/pbsv
pbsv - PacBio structural variant (SV) calling and analysis tools
jamesdalg/TelomereRepeatLoci
Snakemake workflow for detection of telomere repeat loci from WGS data
jamesdalg/tox_data