WGLab/doc-ANNOVAR

Issues

• Please updata prepare_annovar_user.pl for clinvar_20240902.vcf.gz

  #254 opened 4 months ago by xiucz
  12

• annovar annotates bacterial genome variation

  #258 opened 3 months ago by ChenDepp
  3

• Error for annotating chromosome and bp by rsID

  #250 opened 5 months ago by ruuhsu
  1

• one locus match two different transcripts of the same gene

  #253 opened 5 months ago by yanwuanxin
  3

• Error: invalid dbstrand information

  #257 opened 4 months ago by yanwuanxin
  1

• how can I download /humandb/hg19_ALL.sites.2014_10.txt file througth ANNOVAR

  #255 opened 4 months ago by nanu4github
  1

• Error: invalid record found in exonic_variant_function file (exonic format error)

  #216 opened 2 years ago by AnujaM1611
  3

• the base of AAChange.refGene is inconsistent with Ref/Alt

  #252 opened 5 months ago by yanwuanxin
  2

• Missing allele frequencies were annotated when using 1000g2015eas

  #251 opened 5 months ago by fanwayne
  8

• base substitution I input is inconsistent with the calling result

  #249 opened 6 months ago by usernamenickname10
  0

• strand error assignment

  #248 opened 6 months ago by asilvestris84
  1

• index the dbfile by python

  #247 opened 7 months ago by pickpingk
  0

• Dbnsfp33 running time

  #243 opened 9 months ago by tahirasma
  3

• Any plan to add All of US population frequency data as annotation source

  #244 opened 9 months ago by tushardave26
  3

• Update gnomAD database to v4.1 in ANNOVAR (some issues in v4.0)

  #246 opened 8 months ago by zouaghiyassine
  0

• prefix.exonic_variant_function is empty

  #245 opened 8 months ago by yanwuanxin
  1

• Truncated VCF output at chr21

  #242 opened 9 months ago by snakesch
  2

• Download hg38 Gnomad DB

  #241 opened 10 months ago by tahirasma
  1

• prepare_annovar_user.pl not working with COSMIC version 99

  #240 opened 10 months ago by ValerieCrolley
  2

• Annotation of double base substitutions (DBS,DNP)

  #239 opened a year ago by andreyurch
  5

• Downloading annotation database ....Failed

  #237 opened a year ago by Acetyl-ZHOU
  4

• multianno.txt to multianno.vcf

  #238 opened a year ago by parkjooyoung99
  1

• Database Downloads Failing

  #236 opened a year ago by AnthonyShea1
  1

• Index file for gnomad database from gnomad website

  #235 opened a year ago by ShreyGit952
  0

• zygosity column

  #234 opened a year ago by fionaelisa
  0

• annotate.variation.pl showing error

  #233 opened a year ago by VISHUGUPTA-2712
  0

• revel format ?

  #232 opened a year ago by gaom001
  7

• Annovar not responding

  #231 opened a year ago by nahd7d
  0

• wannovar.wglab.org down?

  #230 opened a year ago by nahd7d
  1

• wAnnovar down?

  #229 opened a year ago by fgomez02
  2

• Indels are removing as invalid input

  #228 opened a year ago by akhilpampana
  3

• Cannot able to download annotations from annovar

  #227 opened a year ago by akhilpampana
  4

• Error: the required database file annovar/AT_refGeneMrna.txt/hg18_refGene.txt does not exist.

  #226 opened a year ago by tbestone
  3

• I found some bugs in the refGene.txt

  #225 opened 2 years ago by yang050036
  2

• Invalid record

  #223 opened 2 years ago by syuxuan
  3

• Multiple errors for hg38?

  #224 opened 2 years ago by noranekonobokkusu
  2

• annovar refLink download failed

  #222 opened 2 years ago by dhlee3342
  2

• annovar server down?

  #221 opened 2 years ago by markdunning
  4

• Error when running table_annovar.pl

  #220 opened 2 years ago by yuweisong-uab
  0

• Access to previous versions of ANNOVAR

  #219 opened 2 years ago by senbaikang
  5

• Which version of 1000G database is used for wANNOVAR?

  #218 opened 2 years ago by biofisherman
  5

• Error running system commands

  #215 opened 2 years ago by surakshavinod
  5

• stopgain annotation confused

  #217 opened 2 years ago by jiangldu
  1

• how to get the transcription start site?

  #214 opened 2 years ago by caiji-lh
  1

• Db Download Error

  #212 opened 2 years ago by faramarzgsm
  3

• error

  #213 opened 2 years ago by Ramita2320
  1

• frameshift insertion HGVS different protein position between Annovar and VEP

  #211 opened 2 years ago by RysBen
  2

• Downloads for ensGene, ensGene40 for hg38 no longer work

  #210 opened 2 years ago by slagelwa
  1

• About HGVS 'NM_172351.3:exon13:c.1176-16A>G'

  #209 opened 2 years ago by haiwufan
  0

• Annotation values equal to "0" converted as missing in the output when using table_annovar.pl

  #208 opened 2 years ago by teone182
  1