Pinned Repositories
build-annotation-packages
R code to build the Illumina annotation packages for Bioconductor release
docker-overview
GenomeAnnotation-Lect
Lecture on Genome Annotation in Bioconductor
GenomeAnnotation-Prac
Practical on Genome Annotation in Bioconductor
methylation
microarray-pipeline
Pipeline for the analysis of Illumina BeadArray data
ngs-intro
R-examples
Examples of reading and visualising data in R
retropie
Useful scripts for retropie
shiny-bioinformatics
markdunning's Repositories
markdunning/docker-overview
markdunning/teaching-best-practice
Talk for Sheffield R on how best practices in teaching R have evolved
markdunning/bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
markdunning/bcbioRNASeq
R package for bcbio RNA-seq analysis.
markdunning/chip-seq-training-course
Materials for chip-seq training course in Galaxy and R
markdunning/covid19_plots
trying to recreate some plots I saw on BBC news
markdunning/dimendtp_datamanagement
markdunning/football_rivals
A fun shiny app to compare results and league positions between two football teams using historical data
markdunning/hoehleatsu.github.io
markdunning/LifeSciTrainingSlack
A Slack community of people who do short-format training in the life sciences
markdunning/microbial-pipeline
markdunning/ml-examples
Some examples of applying machine learning in R
markdunning/ml-testing-and-examples
Classifying breast cancer from images
markdunning/MOST
markdunning/MWX-import
Import .MWX files created by Swift II Multi Wavelength
markdunning/northernbug.github.io
The NorthernBUG Website
markdunning/oxford-swc-2018-10-17
Instructors Materials for Oxford Software Carpentry Class on 2018-10-17
markdunning/r-fun
Repo for fun analyses in R
markdunning/r-intermediate
An intermediate level course on the R statistical programming language http://tinyurl.com/cruk-tidyr
markdunning/r-novice-gapminder
Introduction to R for non-programmers using gapminder data.
markdunning/rmats4
Docker for rMATS 4
markdunning/RSE-Sheffield.github.io-1
University of Sheffield Research Software Engineering team's website
markdunning/SheffieldR.github.io
SheffieldR Website
markdunning/SpheroidAnalyseR
markdunning/talks
repo for talks
markdunning/test_dir_class
repository made during R classes, Oxford
markdunning/test_repo
A repository to test RStudio github connection
markdunning/tidier-analysis
Exploring whether I can make my analysis "more tidy"
markdunning/tidy-animated-verbs
Animations of tidyverse verbs using R, the tidyverse, and gganimate
markdunning/wrangling-genomics
Data Wrangling and Processing for Genomics