Pinned Repositories
build-annotation-packages
R code to build the Illumina annotation packages for Bioconductor release
docker-overview
GenomeAnnotation-Lect
Lecture on Genome Annotation in Bioconductor
GenomeAnnotation-Prac
Practical on Genome Annotation in Bioconductor
methylation
microarray-pipeline
Pipeline for the analysis of Illumina BeadArray data
ngs-intro
R-examples
Examples of reading and visualising data in R
retropie
Useful scripts for retropie
shiny-bioinformatics
markdunning's Repositories
markdunning/ngs-intro
markdunning/shiny-bioinformatics
markdunning/2017-07-19-galaxy-workshop
markdunning/2017-10-12-oxford-swc
markdunning/alignedReads
Workshop on dealing with aligned sequencing reads
markdunning/alignment-demo
Shiny app to demonstrate
markdunning/beadarray
Quality Assessment, processing and analysis of Illumina microarray data
markdunning/BeadArrayUseCases
Package for PLoS eductional paper describing Illumina BeadArray analysis
markdunning/cruk-autumn-school-2017
CRUK Bioinformatics Workshop September 2017
markdunning/cruk-summer-school-2016
Analysis of Cancer Genomes
markdunning/docker-mutation-demo
Docker container to run the demo for the Science Festival
markdunning/EuroBioc2017
European Bioconductor Meeting 2017
markdunning/friendly-github-intro
This is a beginner friendly introduction to making open, version-controlled, and collaborative projects using Github.
markdunning/galaxy-annotateMyIDs
A generic tool to get genomic annotation for a generic set of IDs
markdunning/galaxy-fgsea
A galaxy front-end to the Bioconductor fgsea package
markdunning/galaxy-filter-rna-seq-output
A simple tool to filter the output of our RNA-seq pipeline
markdunning/galaxycam.github.io
Galaxy Course Website
markdunning/github-slides
Slides for the workshop Friendly Guide to Github
markdunning/markdunning.github.com
All about me
markdunning/osf-test
markdunning/raw-reads
workshop in dealing with raw reads, primarily in fastq format
markdunning/RNAseq-R
RNAseq analysis in R workshop
markdunning/RSE-Sheffield.github.io
Research Software Engineering @ Sheffield website
markdunning/salmon-v-kallisto
Attempt to create a Docker container where one can test out Salmon and Kallisto
markdunning/sheffield-bioinformatics-core.github.io
Website for The University of Sheffield Bioinformatics Core
markdunning/statistical-issues-illumina-microarray
Supplementary Materials for Statistical Issues in the Analysis of Illumina Data
markdunning/swc-oxford
markdunning/tidy-animated-verbs
Animations of tidyverse verbs using R, the tidyverse, and gganimate
markdunning/training-overview
markdunning/working-with-vcfs