Pinned Repositories
bms353
Materials for BMS Level 3 course Bioinformatics for Biomedical Sciences
microarray-analysis
Materials on the analysis of microarray expression data; focus on re-analysis of public data ( http://tinyurl.com/cruk-microarray)
mMinION
mitochondrial minION data analysis pipeline
NanoCLUST
NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
nf-core-nanopath
nf-core-user-docs
Documentation and user guides relating to deployment of nf-core pipelines on Stanage
periscope
A tool to quantify sub-genomic RNA (sgRNA) expression in SARS-CoV-2 artic network amplicon nanopore sequencing data.
RNAseq-R
RNAseq analysis in R workshop
sheffield-bioinformatics-core.github.io
Website for The University of Sheffield Bioinformatics Core
spatial_transcriptomics_tutorial
A bare bones tutorial on how to analyse spatial transcriptomics data from raw sequencing reads to visualising spatially distinct features
Sheffield Bioinformatics Core's Repositories
sheffield-bioinformatics-core/periscope
A tool to quantify sub-genomic RNA (sgRNA) expression in SARS-CoV-2 artic network amplicon nanopore sequencing data.
sheffield-bioinformatics-core/sheffield-bioinformatics-core.github.io
Website for The University of Sheffield Bioinformatics Core
sheffield-bioinformatics-core/spatial_transcriptomics_tutorial
A bare bones tutorial on how to analyse spatial transcriptomics data from raw sequencing reads to visualising spatially distinct features
sheffield-bioinformatics-core/aplanat_UoS
Simplifies bokeh plotting, particularly tailored for JupyterLab
sheffield-bioinformatics-core/NanoCLUST
NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
sheffield-bioinformatics-core/nf-core-nanopath
sheffield-bioinformatics-core/nf-core-user-docs
Documentation and user guides relating to deployment of nf-core pipelines on Stanage
sheffield-bioinformatics-core/rnaseq-r-online
sheffield-bioinformatics-core/2022_05_19_outreach
Materials for School visit
sheffield-bioinformatics-core/2023_01_Dimen_DTP_training
Data Analysis Training for DiMeN DTP Students
sheffield-bioinformatics-core/bacass
Simple bacterial assembly and annotation pipeline
sheffield-bioinformatics-core/bms31004_2022
BMS31004 - Bioinformatics for Biomedical Science
sheffield-bioinformatics-core/BMS31004_2023
sheffield-bioinformatics-core/command-line-bio
New workshop on using command-line for Bioinformatics
sheffield-bioinformatics-core/Cytoscape_Course
This is a basic cytoscape course intended for beginners to get training with biological network analysis.
sheffield-bioinformatics-core/MetSurvCurv
Survival curves for cancer metastasis
sheffield-bioinformatics-core/misc_scripts
Repository for miscellaneous scripts created by SBC
sheffield-bioinformatics-core/nbug11
Repo for all materials for nbug11
sheffield-bioinformatics-core/nf-core-uosnanoclust
sheffield-bioinformatics-core/ngs_intro_workshop
Introductory workshop on analysis of NGS data in Galaxy and other online tools
sheffield-bioinformatics-core/periscope-variants-publication
sheffield-bioinformatics-core/r-online
Online Training Materials for R
sheffield-bioinformatics-core/rnaseq-beginners
Half-day course on analysing RNA-seq data from counts
sheffield-bioinformatics-core/rnaseq-introduction-online
sheffield-bioinformatics-core/scrnaseq_course
Our course on the analysis of Single-cell RNA-Seq
sheffield-bioinformatics-core/stats-in-r
Statistical Analysis of Biological Data
sheffield-bioinformatics-core/wf-template
Nextflow workflow template repository
sheffield-bioinformatics-core/white_rose_dtp_analytics2
Materials for Analytics 2 module for the White Rose DTP
sheffield-bioinformatics-core/wr_bbsrc_dtp_analytics2_2023
Repository for Analytics 2 teaching for White Rose BBSRC DTP (2023 edition)
sheffield-bioinformatics-core/wr_bbsrc_dtp_analytics2_2024