Pinned Repositories
build-annotation-packages
R code to build the Illumina annotation packages for Bioconductor release
docker-overview
GenomeAnnotation-Lect
Lecture on Genome Annotation in Bioconductor
GenomeAnnotation-Prac
Practical on Genome Annotation in Bioconductor
methylation
microarray-pipeline
Pipeline for the analysis of Illumina BeadArray data
ngs-intro
R-examples
Examples of reading and visualising data in R
retropie
Useful scripts for retropie
shiny-bioinformatics
markdunning's Repositories
markdunning/GenomeAnnotation-Prac
Practical on Genome Annotation in Bioconductor
markdunning/build-annotation-packages
R code to build the Illumina annotation packages for Bioconductor release
markdunning/GenomeAnnotation-Lect
Lecture on Genome Annotation in Bioconductor
markdunning/retropie
Useful scripts for retropie
markdunning/annotate-and-filter
annotatiing and filtering variants
markdunning/annotation-hack
attempt at automated methods for (re-)annotation of microarrays in Bioconductor
markdunning/bioc-intro
A practical to refresh knowledge of R and introduce Bioconductor classes
markdunning/bioc-intro-talk
talk on the basics of Bioconductor and data analysis
markdunning/blenditbayes
Code used in my blog "Blend it like a Bayesian!"
markdunning/crukCIMisc
Various shortcuts for common plotting operations and colour palettes based on Cambridge University and Cancer Research Uk branding
markdunning/dataPackages
Building and checking data packages for Bioconductor
markdunning/further-rna-seq
Clustering, PCA, heatmaps and enrichment analysis of rna-seq data
markdunning/further-rna-seq-prac
Practical on clustering, PCA, and GO enrichment for RNA-seq
markdunning/genome-vis
visualising ngs data with ggplot2 and ggbio
markdunning/genomic_formats
File formats for Genomics data
markdunning/IGV_course
Slides for IGV
markdunning/illumina-talk
A talk on Illumina expression data
markdunning/journal-club
A journal club presenting chapter 8 of the Reproducible Research Book
markdunning/mutation-demo
markdunning/ngs-sandbox
install packages for ngs training and get example data
markdunning/promo
markdunning/rep-research
Slides on doing Reproducible Research in RStudio
markdunning/rnaseq-from-fastq
Workshop on analysing RNA-seq data from fastq files in the Short Read Archive (SRA)
markdunning/rnaseq-prac2
New RNA-seq practical based on papers from Matt Ritchie's lab
markdunning/shiny-examples
markdunning/StringsAndRanges-lect
Lecture on Strings and Ranges in Bioconductor
markdunning/StringsAndRanges-prac
Practical on the uses of Strings and Ranges in Bioconductor
markdunning/summer-school2016
markdunning/test-repo
A test reposittory for the github tutorial
markdunning/training-poster
Creating a poster describing training opportunities