Issues
- 4
compile_pfb.pl issue
#90 opened by sophie-03 - 1
- 3
compile_pfb.pl running time issue
#120 opened by zuyan413 - 1
Inquiry Regarding Suitability of PennCNV for CNV Detection with Low-Resolution Array Data
#118 opened by jeff665547 - 0
compile_pfb.pl issue
#119 opened by taeiseul - 4
Compilation issues
#117 opened by MrDotOne - 2
Create hg38 GC model
#116 opened by BioinfoRDX - 0
Could the number of SNP probes be more than the length of the called CNV (bp)? Image attached
#115 opened by prans-neuro - 2
- 1
How do we get the imm_regions file?
#113 opened by prans-neuro - 1
Generating signal intensity for axiom arrays
#100 opened by sophie-03 - 3
empty GC model files
#83 opened by NTNguyen13 - 0
- 7
- 1
genomic_wave.pl sub trainGCModel subsets lrr values differently to method described in paper
#88 opened by joshuamschmidt - 1
Unable to get genotypes for all markers
#74 opened by chopraamhk - 0
PennCNV-Affy substep 1.3 cluster generation for chrX when all samples are female?
#110 opened by Lydia-King - 0
detect_cnv.pl -test vs detect_cnv.pl -validate
#109 opened by rodrigopsav - 0
- 0
Output file sometimes huge, sometimes small, regardless of number of samples???
#107 opened by Jolleboll - 4
Missing files from affymetrix website
#96 opened by e-sollier - 2
Two questions: 1) filter first or merge first, 2) B allele freq figure for duplication CNVs
#106 opened by xiaoqing-liu - 0
generate_affy_geno_cluster.pl no SNP or CN markers
#105 opened by sophie-03 - 0
PennCNV compilation error
#104 opened by anvarodi - 1
Confidence score calculation
#103 opened by sherrybio - 0
- 1
Running PennCNV in parallel
#82 opened by sophie-03 - 2
GenomeStudio CNV Table Export
#101 opened by jng2 - 0
- 4
Singularity use
#98 opened by lgmgeo - 12
LOH / state4,cn=2 is never called
#92 opened by Nicolai-vKuegelgen - 4
Signal values for 0 CNV region
#93 opened by psychrb - 11
- 1
Docker to Singularity root user access
#91 opened by joshuamschmidt - 2
- 2
Question: Can PennCNV differentiate homozygous and heterozygous CNV calls?
#95 opened by vikrantsingh1 - 5
visualize_cnv.pl
#89 opened by psychrb - 1
- 3
Hmm file for illumina cytoSNP 850K array
#84 opened by Sneha-bioinfo - 2
Compile pfb Bovine data
#86 opened by rodrigopsav - 0
- 1
Creating individual log and BAF input files
#81 opened by sophie-03 - 1
Argument "NA" isn't numeric in numeric gt (>) at ~/detect_cnv.pl line 1632.
#80 opened by shaoxiong2588 - 0
GCmodel file for Bostaurus
#78 opened by oshintogla - 1
clean_cnv.pl output - Empty file
#79 opened by mrinalmishra - 3
RuntimeError Usage: ReadCHMM(filename)
#77 opened by Apprentice2 - 0
visualization error
#76 opened by nitzzzzzzz - 0
Visualization_error
#75 opened by nitzzzzzzz - 1
How can i get Hmm file for affy500k array
#73 opened by zhangjsyeah - 0
hmm file: no such file or directory & the command will not recognise the signallistfile
#71 opened by orla21ocs