Pinned Repositories
biocluster
Tutorial on building a computing cluster for bioinformatics
Bioformer
Bioformer: an efficient BERT model for biomedical text mining
DeepMod
DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications
doc-ANNOVAR
Documentation for the ANNOVAR software
dragonstar2019
InterVar
A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline
NanoCaller
Variant calling tool for long-read sequencing data
PennCNV
Copy number vaiation detection from SNP arrays
phenolyzer
phenotype-based prioritization of candidate genes for human diseases
VirTect
Detection of viruses from RNA-Seq on human samples
Wang Genomics Lab's Repositories
WGLab/DeepMod
DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications
WGLab/phenolyzer
phenotype-based prioritization of candidate genes for human diseases
WGLab/Bioformer
Bioformer: an efficient BERT model for biomedical text mining
WGLab/VirTect
Detection of viruses from RNA-Seq on human samples
WGLab/CancerVar
Clinical interpretation of somatic mutations in cancer
WGLab/Phen2Gene
Phenotype driven gene prioritization for HPO
WGLab/NanoMod
NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data
WGLab/RepeatHMM
a hidden Markov model to infer simple repeats from genome sequences
WGLab/LongGF
A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing
WGLab/SeqMule
Automated human exome/genome variants detection from FASTQ files
WGLab/Workshop_Annotation
Course materials for "Variants Annotate and Phenotype Analysis"
WGLab/DeepRepeat
An accurate repeat detection from Nanopore data using deep learning and image techniques
WGLab/lncScore
A python package for the identification of lncRNA from the assembled novel transcripts
WGLab/icages
iCAGES (integrated CAncer GEnome Score) is an effective tool for prioritizing cancer driver genes for a patient
WGLab/AmpBinner
A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data
WGLab/epilepsy-autism-multiplex-network
WGLab/PennCNV-Seq
Adaption of the original PennCNV algorithm for whole-genome sequencing data
WGLab/kgev-neo4j
WGLab/NanoBinner
WGLab/Phen2Gene2
Phen2Gene improved and optimized for pipelines
WGLab/w4CSeq
web server of 4C-Seq data analysis pipeline
WGLab/ASD_terminology
WGLab/HTT-SNP-Phasing
WGLab/SGAN
SGAN (Oncogenicity score prediction using Semi-supervised Generative Adversarial Networks)
WGLab/AnalysisKGE
Some papers on Knowledge Graph Embedding(KGE)
WGLab/ASD-terminology
WGLab/BAIFW_2019_class
WGLab/Down-Syndrome-Analysis
Cluster the NERs from Down Syndrome Patients
WGLab/PhenCards-dbrelease
A db-release of PhenCards to coincide with the release of the paper
WGLab/TermViewer
Repository for NLP project filtering medical notes