Pinned Repositories
biocluster
Tutorial on building a computing cluster for bioinformatics
Bioformer
Bioformer: an efficient BERT model for biomedical text mining
DeepMod
DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications
doc-ANNOVAR
Documentation for the ANNOVAR software
dragonstar2019
InterVar
A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline
NanoCaller
Variant calling tool for long-read sequencing data
PennCNV
Copy number vaiation detection from SNP arrays
phenolyzer
phenotype-based prioritization of candidate genes for human diseases
VirTect
Detection of viruses from RNA-Seq on human samples
Wang Genomics Lab's Repositories
WGLab/dragonstar2019
WGLab/HadoopCNV
HadoopCNV is a MapReduce-based copy number variation caller for genome sequencing data
WGLab/GDP
Group lasso based Deep Neural Network for Cancer Prognosis
WGLab/PennCNV2
A software package for detection of copy number alterations from tumor samples
WGLab/SVGen
Simulator for structural variants in various types of next-generation sequencing data
WGLab/iMEGES
integrated Mental-disorder Genome Score
WGLab/UROBORUS
UROBORUS: circular RNA identification from RNA-Seq data
WGLab/uniline
Assembly-based analysis
WGLab/EnhancedFALCON
FALCON: experimental PacBio diploid assembler
WGLab/icages-server
the iCAGES server running on Ruby on Rails
WGLab/lncScore-Java
Prediction of lncRNA from RNA-Seq data
WGLab/Enlight
Web server for epigenetic annotation of genetic variants
WGLab/bibm2017-workshop
Home page for the "Translational Bioinformatics in Precision Medicine" workshop in BIBM2017
WGLab/FALCON-integrate
Build and integration- testing for FALCON
WGLab/GDNNP-visualization
Repository to host the visualizations for iCAGES
WGLab/SeqApp
A R package to analyze double-stranded DNA breaks from sequence data
WGLab/SparkInternals
Notes talking about the design and implementation of Apache Spark
WGLab/wglab.github.io
Distribution website for software tools developed by WGLab