Issues
- 2
Can DeepMod use to other single bacteria such as Pseudomonas aeruginosa? Which command can I use?
#62 opened by rhyer0418 - 2
Installation problems in 2023
#61 opened by anish-taori - 1
- 7
No event in fast5 files.
#59 opened by Bin-Ma - 3
Error!!! No Raw_reads/Signal data /Raw/Reads
#58 opened by bakeronit - 2
- 5
No events data in fast5
#56 opened by fire-activate - 0
No events data in fast
#55 opened by fire-activate - 5
Cannot open fast5 or other errors
#52 opened by zmy24 - 5
Why DeepMod program filter out sites with `methylated coverage==0` predicted by DeepMod?
#49 opened by liuyangzzu - 1
- 1
GPU recommendations?
#51 opened by chuanli11 - 13
The result of NA12878 and HX1
#35 opened by Smart-zhi - 8
- 0
shared motif information and scripts
#50 opened by liuqianhn - 1
- 1
- 1
Using DeepMod for other eukaryote species
#46 opened by rodriguesbc - 8
What datasets can be used to run DeepMod
#45 opened by gottaMe - 1
- 6
- 7
basecaller versions
#31 opened by skerker - 2
Does the model support using move table?
#33 opened by vahidAK - 30
No events data in fast5
#29 opened by lqsae - 2
Can I use flappie guppy or taiyaki run base call process, and then running DeepMod process for methylation calling?
#28 opened by forrwill - 11
Evaluation of Na12878 dataset
#36 opened by Jerry-0591 - 4
How to filter results?
#37 opened by qiuyixmm - 2
Deepmod-GPU
#38 opened by Marozi2 - 2
"python bin/DeepMod.py detect" produces error
#41 opened by ViHammer - 3
What are 7th-9th columns in the output?
#40 opened by PanZiwei - 7
Error!!! No Channel Info in /users/PAE57595_pass_barcode01_83605eaf_16.fast5
#39 opened by chenchen-eng - 6
No Fastq data in fast5
#32 opened by laguda-1996 - 2
Trained models and training DeepMod
#34 opened by pepebonet - 2
On version of tensorflow
#30 opened by orangehe - 13
The index of the first base is less than -2
#27 opened by lemonsky123 - 13
Basecalled fast5 files
#24 opened by vahidAK - 3
Model Training: Parameters and model metrics
#17 opened by cednotsed - 6
where to download albacore v2.3+
#23 opened by Zhenhuiz - 2
- 4
- 1
Does DeepMod support 5hmc detection now?
#20 opened by mbasam - 2
Can DeepMod support multi-fast5 files?
#18 opened by gongyh - 4
No Channel Info
#21 opened by Zhenhuiz - 6
No Fastq data in fast5
#19 opened by qiuyixmm - 2
Question about the format of input data
#16 opened by Musketeer-D - 2
Question about the format of output
#14 opened by Musketeer-D - 1
Reproducibility: NA12878 Dataset
#15 opened by cednotsed - 2
the output format of detect module
#13 opened by PengNi - 1
- 3
Compatibility with data got from using different versions of sequencing chemistry?
#11 opened by ShangjinTan