WGLab/DeepMod2

Issues

• Error！Deepmod2 analysis of human methylation

  #29 opened 2 days ago
  2

• About the compatiblity of Dorado basecalling model

  #28 opened a month ago
  1

• some output files are missing

  #27 opened 23 days ago
  7

• Training data from HG002, HG003 and HG004

  #26 opened 2 months ago
  1

• About guppy model

  #25 opened 4 months ago
  3

• --model 'transformer_r10.4.1_5khz_v4.3' has error "UnboundLocalError: local variable 'model' referenced before assignment "

  #24 opened 4 months ago
  1

• not running

  #23 opened 5 months ago
  4

• TypeError: unsupported operand type(s) for +: 'int' and 'list'

  #22 opened 5 months ago
  3

• Unable to see GPU utilization when running deepmod2 detect

  #21 opened 5 months ago
  1

• Can DeepMog2 run with 260bps models ?

  #20 opened 5 months ago
  1

• Example: ValueError: failure when retrieving sequence on 'chr1'

  #19 opened 6 months ago
  1

• ModuleNotFoundError: No module named 'torch'

  #18 opened 5 months ago
  7

• local variable 'non_primary_reads' referenced before assignment

  #17 opened 7 months ago
  2

• Failed running deepmod2 detect and not found model

  #16 opened 8 months ago
  3

• Does Deepmod2 have a 6mA detection model now?

  #15 opened 7 months ago
  1

• example deepmod2 output result file?

  #14 opened 7 months ago
  2

• Error with BAM file on Command 3

  #13 opened a year ago
  1

• detect unknown modifications

  #12 opened a year ago
  1

• Unable to visualzie DeepMod2 results in IGV

  #11 opened 7 months ago
  2

• TypeError: 'NoneType' object is not subscriptable

  #10 opened a year ago
  2

• Encountering errors with BAM file

  #9 opened 7 months ago
  28

• The consistency of 5mC methylation generated by DeepMod and DeepMod2

  #8 opened 2 years ago
  0

• The basecalling and alignment can be performed separately?

  #7 opened 2 years ago
  2

• methylation calling in non-CpG context (CHG and CHH)

  #6 opened 2 years ago
  8

• KeyError: 'segmentation' after running detect-guppy

  #5 opened 7 months ago
  9

• Please refer to DeepMod2 for the updated tool.

  #4 opened 7 months ago
  1

• TypeError: 'NoneType' object is not subscriptable

  #3 opened 7 months ago
  1

• Why doesn't Deepmod2 have a 6mA detection model, will it be developed subsequently?

  #2 opened 7 months ago
  4