Add Pathway Commons

Question

Add Pathway Commons

Closed this issue 4 years ago · 3 comments

https://www.pathwaycommons.org is the resource. Can actually search by Phenotype. First result for cleft palate is a disease pathway with cleft palate as a symptom. Reactome represents most of their results. Their work is CC BY 4.0 public and so is Reactome. So I think this works well.

Searching is easy, can add to API.py with https://apps.pathwaycommons.org/search?type=Pathway&q=cleft%20palate replacing
"cleft palate" with the query. Maybe tough to parse. Will look for API.

Answer 1 · 2020-08-27T21:55:30.000Z

API: https://www.pathwaycommons.org/pc2/

Answer 2 · 2020-08-27T22:17:01.000Z

https://www.pathwaycommons.org/pc2/search.json?type=Pathway&q=cleft%20palate would be the query for JSON data.

Answer 3 · 2020-09-20T07:15:51.000Z

Finished with PR #85.