/nes-lter-chl-transect

NES-LTER Transect cruise chlorophyll from CTD rosette data package prepared for EDI

MIT LicenseMIT

Creating a Data Package for NES-LTER Chl Transect Cruise Data

This repository displays the workflow used to process the NES-LTER Transect cruise chlorophyll data from CTD rosette for publication to the Environmental Data Initiative repository.

This workflow includes the following:

  1. compiles cruise data from the REST API and supplies useful fields for the end user
  2. merges cruise data from additional sources
  3. cleans the provided data
  4. performs quality assurance on the data
  5. assembles and outputs the final XML file for submission to EDI

Base Requirements:

  • Microsoft Excel
  • R and R studio (packages: here, tidyverse, readxl, lubridate, devtools, EMLassemblyline, EML, maps, xml2, geosphere, httr)