Pinned Repositories
3d-dna
3D de novo assembly (3D DNA) pipeline
5hmUseq
Data analysis for sequencing 5-hydroxymethyluracil at single-base resolution (via chemical modification and mismatch formation)
AiLearning
AiLearning: 机器学习 - MachineLearning - ML、深度学习 - DeepLearning - DL、自然语言处理 NLP
allhic
Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
amplicon
Statistics and visualization for amplicon data
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
Bioinfo_course_bash
pacbio-assemble-canu
A single molecule sequence assembler for genomes large and small.
QIIME2ChineseManual
QIIME 2中文文档(QIIME 2 Chinese Manual)
WJT0925.github.io
Ph.D. student from State Key Laboratory of Marine Environmental Science of XMU
WJT0925's Repositories
WJT0925/QIIME2ChineseManual
QIIME 2中文文档(QIIME 2 Chinese Manual)
WJT0925/5hmUseq
Data analysis for sequencing 5-hydroxymethyluracil at single-base resolution (via chemical modification and mismatch formation)
WJT0925/Bioinfo_course_R
WJT0925/bioinformatics
WJT0925/bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
WJT0925/csvtk
A cross-platform, efficient and practical CSV/TSV toolkit in Golang
WJT0925/dadi_pipeline
An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting goodness of fit tests, and plotting.
WJT0925/estimate_genome_size.pl
Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
WJT0925/Genome_assemble_FALCON
FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries
WJT0925/GEO
WJT0925/GeorgiScripts
WJT0925/ggplotify
ggplot everything
WJT0925/ggtree
:christmas_tree:Visualization and annotation of phylogenetic trees
WJT0925/lastz
Program for aligning DNA sequences, a pairwise aligner.
WJT0925/Metagenome
Metagenome analysis pipeline
WJT0925/my-R
a small collection for my R scripts
WJT0925/NGS_data_processing
Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.
WJT0925/paper-xiong2016
WJT0925/psmc
Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
WJT0925/python-machine-learning-book
The "Python Machine Learning" book code repository and info resource
WJT0925/RAxML
RAxML
WJT0925/RNAseq-workflow
A repository for setting up a RNAseq workflow
WJT0925/s-plot
A simple plot library
WJT0925/Scripts
WJT0925/seqkit
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
WJT0925/seqtk
Toolkit for processing sequences in FASTA/Q formats
WJT0925/TBtools
GUI/CommandLine Tool Box for biologistists to utilize NGS data.
WJT0925/vcf2phylip
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis