WangDongHKU/Model-Manaus-Iquitos_SEIRSD

README

This repository provides the script to reproduce the work from Daihai et al. 2023

Notes:

• The code is developed for [linux].
• Running auto.R takes several hours to complete.
• Run the file result.R to collect and process the running results.
• best_ncov.csv always contains the current best MLL and MLE.
• Run the file fig3.R to reproduce the paper's main results.
• You can register to join our zotero group to download the source code of pomp.orig R package at: https://www.zotero.org/groups/4832328/lixin_lin

References:

• King AA. Working with ordinary differential equations in pomp 2017. Available from: https://kingaa.github.io/clim-dis/parest/odes.html.
• LU factorization for a tridiagonal matrix. Available from: https://www.webpages.uidaho.edu/~barannyk/Teaching/LU_factorization_tridiagonal.pdf.