Pinned Repositories
Analysis-of-species-transcriptome-WGCNA
WGCNA analysis was conducted to integrate different data from different articles of the same species to find the defense modules of each species
book
clusterProfiler
:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters
CRISPR_Barcode_HiTom_Analysis
https://tiramisutes.github.io/CRISPR_Barcode_HiTom_Analysis/
de-wrapper-scripts
Perl scripts used to wrap application published in the DE
findGSE
findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a skew normal distribution model.
GCE
GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size ,genomic repeat content and the heterozygsis rate of the sequencing sample.
googlr
Googlr is a command line tool that lets you search Google from your terminal.
grn
Maize Gene regulatory network (MaizeGRN)
ILPBdb
Wangqq0515's Repositories
Wangqq0515/Analysis-of-species-transcriptome-WGCNA
WGCNA analysis was conducted to integrate different data from different articles of the same species to find the defense modules of each species
Wangqq0515/book
Wangqq0515/clusterProfiler
:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters
Wangqq0515/CRISPR_Barcode_HiTom_Analysis
https://tiramisutes.github.io/CRISPR_Barcode_HiTom_Analysis/
Wangqq0515/de-wrapper-scripts
Perl scripts used to wrap application published in the DE
Wangqq0515/findGSE
findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a skew normal distribution model.
Wangqq0515/GCE
GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size ,genomic repeat content and the heterozygsis rate of the sequencing sample.
Wangqq0515/googlr
Googlr is a command line tool that lets you search Google from your terminal.
Wangqq0515/grn
Maize Gene regulatory network (MaizeGRN)
Wangqq0515/ILPBdb
Wangqq0515/IsoSeq
IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
Wangqq0515/jcvi
Python library to facilitate genome assembly, annotation and comparative genomics
Wangqq0515/Learn-Bioinformatics
Wangqq0515/maize_tissue-specific_GRN
The repository source code for maize tissue-specific GRN project
Wangqq0515/NextDenovo
Fast and accurate de novo assembler for third generation sequencing (TGS) reads
Wangqq0515/OneKP-gene-family-evo
Gene family evolution analysis of OneKP capstone paper
Wangqq0515/OrthoFinder
Phylogenetic orthology inference for comparative genomics
Wangqq0515/rnaseq
public RNA-Seq datasets
Wangqq0515/rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
Wangqq0515/rnaseq_workflow
snakemake workflow for bulk RNA-seq workflow using STAR-edgeR
Wangqq0515/Roary
Rapid large-scale prokaryote pan genome analysis
Wangqq0515/Snakemake-RNAseq-Workflow
Snakemake Pipeline for RNASeq Workflow
Wangqq0515/TO-GCN
Pipeline of time-ordered gene coexpression network (TO-GCN) construction from three-dimensional (gene expression, condition, and time) data
Wangqq0515/webSCST
A web tool for single-cell RNA-seq data and spatial transcriptome data integration
Wangqq0515/webservice-clients
A collection of Web Service Clients to consume EBI's tools via REST and SOAP APIs.