Waschina
Bioinformatician/systems biologist with a focus on microbial ecology
Kiel UniversityKiel, Germany
Pinned Repositories
21_diet_microbiome
Metabolic modelling of microbial community metabolism (Diet-Microbiome-Study 2021)
AGORA2_auxotrophies
atlas
ATLAS - Three commands to start analyzing your metagenome data
atp8_metabopwy
cobrar
COnstraint-based Reconstruction and Analysis (COBRA) of metabolic networks in R
Eutropia
Agent-based metabolic modelling of microbial communities in time and continuous µ-meter-scale space
gapseq.biochem
Exploring gapseq's biochemistry database
gapseqEval
Data and scripts for evaluations tests
MicrobiomeGS2
Waschina's Repositories
Waschina/cobrar
COnstraint-based Reconstruction and Analysis (COBRA) of metabolic networks in R
Waschina/gapseqEval
Data and scripts for evaluations tests
Waschina/Eutropia
Agent-based metabolic modelling of microbial communities in time and continuous µ-meter-scale space
Waschina/MicrobiomeGS2
Waschina/AGORA2_auxotrophies
Waschina/gapseq.biochem
Exploring gapseq's biochemistry database
Waschina/21_diet_microbiome
Metabolic modelling of microbial community metabolism (Diet-Microbiome-Study 2021)
Waschina/atlas
ATLAS - Three commands to start analyzing your metagenome data
Waschina/atp8_metabopwy
Waschina/chem_shift_imaging_NMR
Waschina/gapseq
Informed prediction and analysis of bacteria metabolic pathways and genome-scale networks
Waschina/gapseq.tutorial.data
Files and scripts for gapseq tutorials
Waschina/bioconda-recipes
Conda recipes for the bioconda channel.
Waschina/cobrarCPLEX
CPLEX support for the R-package cobrar
Waschina/gapsnake
A snakemake workflow for gapseq reconstructions
Waschina/Graz_Cortison
Waschina/HCC_microbiota2022
Waschina/homebrew-bio
:beer::microscope: Bioinformatics formulae for the Homebrew package manager (macOS and Linux)
Waschina/homebrew-core
🍻 Default formulae for the missing package manager for macOS (or Linux)
Waschina/libsbml
LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (SBML). It offers language bindings for C, C++, C#, Java, JavaScript, MATLAB, Perl, PHP, Python, R and Ruby.
Waschina/mxe
MXE (M cross environment)
Waschina/particles
A particle simulation engine based on a port of d3-force
Waschina/recipes
System for building static dependent libraries for CRAN packages
Waschina/sybil
Efficient Constrained Based Modelling in R
Waschina/sybil.diagnostics
A set of simple diagnostics tests for sybil metabolic models.