/Crop-Locator-Tool

Locates crops taken from micro-CT scans using JavaScript and GPU acceleration (CURRENTLY ONLY SUPPORTS SPECIFIC LAB FORMATS).

Primary LanguageJavaScriptMIT LicenseMIT

Crop Locator Tool

A tool that locates crops taken from medical images (tiffs), including rotated and resliced crops.

This tool is useful in a lab setting, for example, a crop is taken from a 3D tiff in Fiji, but the location is not recorded. Upload the original image and the crop to our tool, and it will locate the crop.

Usage

Visit https://we-gold.github.io/Crop-Locator-Tool/ for the web-based user interface.

Installation

For development purposes, this repository can be installed locally via the following steps.

  1. Clone the repository locally
  2. Make sure Node.js >= 14 and npm >= 7 are installed
  3. Enter the local repository
  4. Run npm install
  5. Run npm run dev to start a local server running the code

Testing and Development

See the project wiki for documentation.

Browser Compatibility

This tool has been tested on modern versions of Chrome, Edge, and Firefox. It does not work on IE, and is untested on Safari.

License

The code is available under the MIT License.