WeiSong-bio/JEFworks-public-bioinformatics-datasets

Public Bioinformatics Datasets

Publicly available dataset for bioinformatics and integrative -omics research (on-going)

Genomics

• Exome Aggregation Consortium dataset
• 1000 Genomes Project
• Personal Genomes Project
• HapMap Project
• NHLBI exome sequencing project

Transcriptomics

• Geuvadis RNA sequencing project
  → Available in convenient RData format from the Leek lab
• GTEx
• ReCount
• Single Cell Analysis Program – Transcriptome Project
• Stanford microarray database

Epigenomics

• Epigenomics Roadmap

Clinical and Healthcare

• iDash data repository (has several datasets)
• i2b2 NLP datasets
• Medline
• Surveillance, Epidemiology, and End Results (SEER) for cancer
• MIMIC II
• Healthcare Cost and Utilization Project (HCUP)
• National Health and Nutrition Examination Survey (NHANES)
• National Ambulatory Medical Care Survey (NAMCS/NHAMCS)
• Community Tracking Study
• National Health Interview Survey