WengLab-InformaticsResearch

Weng Lab at Columbia University DBMI

Pinned Repositories

CHIA
Language:R41
cohd_api
Language:Jupyter Notebook2 4 144
cohd_api_fork
Columbia Open Health Data API
Language:Jupyter Notebook20
COVID19-TrialFinder
Language:HTML23
DQueST
Language:Python21
ehr_prevalence
EHR Prevalence and Co-occurrence Analysis
Language:Python3 1 01
EvidenceMap_Model
a gold standard dataset of randomized controlled trial (RCT) abstracts annotated with the EvidenceMap representation
Language:Python11
PICO_Parser
A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework
Language:Python7 3 00
PubMed-RCT-Outcome-Extraction
3 2 01
UMLS-EDA
A light-weighted UMLS-based data augmentation for biomedical NLP tasks including Named Entity Recognition and sentence classification.
Language:Python10 3 11

WengLab-InformaticsResearch's Repositories

WengLab-InformaticsResearch/UMLS-EDA
A light-weighted UMLS-based data augmentation for biomedical NLP tasks including Named Entity Recognition and sentence classification.
Language:Python10 3 11
WengLab-InformaticsResearch/ehr_prevalence
EHR Prevalence and Co-occurrence Analysis
Language:Python3 1 01
WengLab-InformaticsResearch/PubMed-RCT-Outcome-Extraction
3 2 01
WengLab-InformaticsResearch/cohd_api
Language:Jupyter Notebook2 4 144
WengLab-InformaticsResearch/cohd_api_fork
Columbia Open Health Data API
Language:Jupyter Notebook20
WengLab-InformaticsResearch/COVID19-TrialFinder
Language:HTML23
WengLab-InformaticsResearch/cohd-rare
Language:JavaScript10
WengLab-InformaticsResearch/delirium
Delirium classification model
Language:Jupyter Notebook1 1 00
WengLab-InformaticsResearch/eMERGE-Invitae-Redox
Language:Python10
WengLab-InformaticsResearch/EvidenceMap_Model
a gold standard dataset of randomized controlled trial (RCT) abstracts annotated with the EvidenceMap representation
Language:Python11
WengLab-InformaticsResearch/GIST
GIST 3.0: An Automatic Clinical Trial Generalizability Assessment Framework
Language:JavaScript1 2 11
WengLab-InformaticsResearch/mcephe
Language:Python1 2 01
WengLab-InformaticsResearch/ontology-based-clinical-study-categorization
Data, source code, and demo for manuscript Ontology-based Classification of Clinical Studies by Their Conditions
Language:Java1
WengLab-InformaticsResearch/PICOX
Language:Jupyter Notebook11
WengLab-InformaticsResearch/COVID19-TrialMatcher
An Interactive Interface for the Search of Clinical Trials Matching the Target Trial
Language:Python0 3 01
WengLab-InformaticsResearch/cohd-covid
WengLab-InformaticsResearch/Covid19-Breakthrough
Language:R
WengLab-InformaticsResearch/COVID19-Structured_Trials
An OMOP Common Data Model-Compliant Annotated Corpus for COVID-19 Clinical Trials
WengLab-InformaticsResearch/covid_subgrouping
COVID-19 Subgrouping
Language:Jupyter Notebook1
WengLab-InformaticsResearch/Criteria_Phenotypes_ReferenceforJRRAim1
This repository just contains codes for phenotypes used in an exploration project that examines the effects of different criteria combinations. The codes are in concept_id format used by the OMOP CDM standard.
WengLab-InformaticsResearch/CV_criteria
0 0
WengLab-InformaticsResearch/doc2hpo
Language:Java
WengLab-InformaticsResearch/eIV-recruitement-support-redcap
Language:Python0 0
WengLab-InformaticsResearch/eMERGE-GIRA-CDE
Language:Python
WengLab-InformaticsResearch/Generalizability_of_RCT_Follow_Up_Time
WengLab-InformaticsResearch/Intervention_Normalizer
Language:Python1
WengLab-InformaticsResearch/MCR-learning-toolkits
Language:Python1 0
WengLab-InformaticsResearch/MD-Attention
MD-informed Self-Attention: a neuro-symbolic model for machine reading comprehension of clinical research literature.
WengLab-InformaticsResearch/MedicalCodingSequence
This package helps to convert clinical data into Medical Coding Sequences.
Language:Python
WengLab-InformaticsResearch/oard-react