Pinned Repositories
ABLITZER
ABLITZER (the Analyzer of BLITZ Result) is a custom software suite (MATLAB) to process data produced by BLITZ (Behavioral Learning In The Zebrafish) which is another custom software (c++) that can automatically acquire high-throughtput behavioral data of larval zebrafish in learning tasks.
Auto-Worm-Behavior-Detector
A software to automatically recognize the behaviours of C. elegans
BLITZ
Unified system code for running zebrafish operant learning experiment. Including visual stimulus generation (OpenGL), online image processing (OpenCV), video capture (Pylon) and relay control (Serial Comm).
CeNDeR
Processing pipeline, dataset, human annotation and proofreading toolkit for “Rapid detection and recognition of whole brain activity in a freely behaving Caenorhabditis elegans”
CeNDeR-annotation
This toolkit can view and annotate whole brain imaging data.
Computation-Neuro-Course
Welcome to the land of C Neuro.
Dual-Color-Image-Processing
freeBrain
🧠 freeBrain provides real-time solutions for monitoring, manipulating, and modelling brain activity in a freely behaving animal. 🪱
Lab-Communication
For discussions and comments across groups.
Worm-Motor-Sequence-Generation
Wenlab's Repositories
Wenlab/Computation-Neuro-Course
Welcome to the land of C Neuro.
Wenlab/CeNDeR
Processing pipeline, dataset, human annotation and proofreading toolkit for “Rapid detection and recognition of whole brain activity in a freely behaving Caenorhabditis elegans”
Wenlab/freeBrain
🧠 freeBrain provides real-time solutions for monitoring, manipulating, and modelling brain activity in a freely behaving animal. 🪱
Wenlab/BLITZ
Unified system code for running zebrafish operant learning experiment. Including visual stimulus generation (OpenGL), online image processing (OpenCV), video capture (Pylon) and relay control (Serial Comm).
Wenlab/ABLITZER
ABLITZER (the Analyzer of BLITZ Result) is a custom software suite (MATLAB) to process data produced by BLITZ (Behavioral Learning In The Zebrafish) which is another custom software (c++) that can automatically acquire high-throughtput behavioral data of larval zebrafish in learning tasks.
Wenlab/Auto-Worm-Behavior-Detector
A software to automatically recognize the behaviours of C. elegans
Wenlab/Worm-Motor-Sequence-Generation
Wenlab/CeNDeR-annotation
This toolkit can view and annotate whole brain imaging data.
Wenlab/Lab-Communication
For discussions and comments across groups.
Wenlab/Online-Zebrafish-Optogenetic-System
Source code of online optogenetic system in "All-optical interrogation of brain-wide activity in freely swimming larval zebrafish"
Wenlab/CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
Wenlab/Dual-Color-Image-Processing
Wenlab/Extract_Colbert_Yaml_File
Wenlab/internal.mindcontrolAPI
Interprocess C API / DLL for getting data in and out of the mindcontrol application in realtime.
Wenlab/InterProcess
A compact C library to share data between processes on Windows. Fast. Simple
Wenlab/Larval-Zebrafish-Tracking
Wenlab/Neuronal-Morphology
Wenlab/OptoSwim
Wenlab/SpikingNeuralNetworks.jl
Julia Spiking Neural Network Simulator
Wenlab/The-Behaviors-of-Planarians
analysis the behavior of planarians
Wenlab/worm-centerline-extraction
extract worm centerline
Wenlab/worm-utility-toolbox
Utility functions for processing worm data.
Wenlab/BASS
Code for the "Behavioral Action Sequence Segmentation" algorithm.
Wenlab/Calcium_Imaging_of_a_Single_Neuron
Extract the light intensity from calcium imaging of a single neuron in C. elegans.
Wenlab/Calcium_Imaging_of_Single_Neuron
Wenlab/Calculate_the_Curvature_of_a_Centerline
Calculate the Curvature of a Centerline of C. elegans
Wenlab/dPCA
An implementation of demixed Principal Component Analysis (a supervised linear dimensionality reduction technique)
Wenlab/FastLZeroSpikeInference
Fast Exact Spike Inference Via L0 Optimization
Wenlab/OASIS_matlab
Wenlab/ZephIR-preprocessing
Preprocessing image stacks to be used in ZephIR