WhalleyT

Bioinformatician at Public Health Wales

Public Health WalesCardiff

Pinned Repositories

Afanc
Afanc high-resolution metagenomics disambiguator
Language:Python00
ansible.nextflow-container
Ansible playbook for installing Nextflow, Docker and SingularityCE. Tested using GitHub Actions.
00
hex
Homology Evaluation of Xenopeptides (HEX)
Language:R3 1 10
lodestone-ci
Repo containing Lodestone pipeline, with Github Actions workflow to test Nextflow pipeline.
Language:Nextflow00
PICPL
GPU accelerated combinatorial peptide library peptide scanning
2 2 01
RECIPIENT
RECIPIENT: a pangenome reverse vaccinology pipeline
Language:Nextflow10
SCASA
Python module for the calculation of shape complementarity
Language:Python10
stacei2
Standalone implementation of STACEI in pure Python
Language:Python1 1 00
STACEI_old
STACEI: STructural Analysis of TCR-pEptide-MHC Interactions
Language:Python2 1 10
tajima
Quick and simple implementation of Tajima's D
Language:Python2 0 11

WhalleyT's Repositories

WhalleyT/hex
Homology Evaluation of Xenopeptides (HEX)
Language:R3 1 10
WhalleyT/PICPL
GPU accelerated combinatorial peptide library peptide scanning
2 2 01
WhalleyT/STACEI_old
STACEI: STructural Analysis of TCR-pEptide-MHC Interactions
Language:Python2 1 10
WhalleyT/tajima
Quick and simple implementation of Tajima's D
Language:Python2 0 11
WhalleyT/RECIPIENT
RECIPIENT: a pangenome reverse vaccinology pipeline
Language:Nextflow10
WhalleyT/SCASA
Python module for the calculation of shape complementarity
Language:Python10
WhalleyT/stacei2
Standalone implementation of STACEI in pure Python
Language:Python1 1 00
WhalleyT/Afanc
Afanc high-resolution metagenomics disambiguator
Language:Python00
WhalleyT/ansible.nextflow-container
Ansible playbook for installing Nextflow, Docker and SingularityCE. Tested using GitHub Actions.
00
WhalleyT/covid-flu-coinfection-model
Shiny app for modelling COVID-inlufenza coinfection
Language:R0 1 00
WhalleyT/CPLutils
CPL scanning utility
Language:Python0 1 00
WhalleyT/datapipe
Nextflow implementation of grapevine
Language:Nextflow0 0 00
WhalleyT/Guest-et-al.-2022-Environment-Microbiology
Code repository for the analysis in "Responses of Salmonella biofilms to oxidizing biocides: Evidence of spatial clustering", Guest et al., 2022.
Language:R0 1 00
WhalleyT/lodestone-ci
Repo containing Lodestone pipeline, with Github Actions workflow to test Nextflow pipeline.
Language:Nextflow00
WhalleyT/Peptide-Alignment
short CUDA C++ programme to to an average PAM30 of peptides from query to a reference FASTA
Language:Cuda0 0 00
WhalleyT/singularity-recipes
Collection of bioinformatics singularity recipes
Language:Shell0 1 00
WhalleyT/VCFMIX
In VCF files of reference mapped data, determine mixed positions. Adding a fix for a bug + packaging
Language:Python

WhalleyT

Pinned Repositories

Afanc

ansible.nextflow-container

hex

lodestone-ci

PICPL

RECIPIENT

SCASA

stacei2

STACEI_old

tajima

WhalleyT's Repositories

WhalleyT/hex

WhalleyT/PICPL

WhalleyT/STACEI_old

WhalleyT/tajima

WhalleyT/RECIPIENT

WhalleyT/SCASA

WhalleyT/stacei2

WhalleyT/Afanc

WhalleyT/ansible.nextflow-container

WhalleyT/covid-flu-coinfection-model

WhalleyT/CPLutils

WhalleyT/datapipe

WhalleyT/Guest-et-al.-2022-Environment-Microbiology

WhalleyT/lodestone-ci

WhalleyT/Peptide-Alignment

WhalleyT/singularity-recipes

WhalleyT/VCFMIX