WhirlFirst

WhirlFirst's Stars

• anthropics/anthropic-sdk-python

  Language:Python1.4k171

• zhentingqi/rStar

  Language:Python45849

• snap-stanford/BioDiscoveryAgent

  BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments

  Language:Python223

• cmhimself/QueST

  A novel subgraph representation learning model for solving the spatial niche querying problem.

  Language:Jupyter Notebook2

• BrendanGraham14/mcts-llm

  Language:Python5612

• Genentech/iterative-perturb-seq

  Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors

  Language:Jupyter Notebook332

• vllm-project/vllm

  A high-throughput and memory-efficient inference and serving engine for LLMs

  Language:Python29.3k4.4k

• facebookresearch/xformers

  Hackable and optimized Transformers building blocks, supporting a composable construction.

  Language:Python8.5k610

• facebookresearch/sam2

  The repository provides code for running inference with the Meta Segment Anything Model 2 (SAM 2), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.

  Language:Jupyter Notebook12k1.1k

• acmesh-official/acme.sh

  A pure Unix shell script implementing ACME client protocol

  Language:Shell39.1k5k

• rapidsai/cudf

  cuDF - GPU DataFrame Library

  Language:C++8.4k898

• LAION-AI/CLIP_benchmark

  CLIP-like model evaluation

  Language:Jupyter Notebook60177

• Justherozen/FreeAL

  [EMNLP 2023] FreeAL: Towards Human-Free Active Learning in the Era of Large Language Models

  Language:Python835

• mahmoodlab/HEST

  HEST: Bringing Spatial Transcriptomics and Histopathology together - NeurIPS 2024

  Language:Python14213

• OmicsML/dance

  DANCE: a deep learning library and benchmark platform for single-cell analysis

  Language:Python34935

• EperLuo/scDiffusion

  A model developed for the generation of scRNA-seq data

  Language:Jupyter Notebook346

• SHI-Labs/Smooth-Diffusion

  Smooth Diffusion: Crafting Smooth Latent Spaces in Diffusion Models arXiv 2023 / CVPR 2024

  Language:Python3138

• theislab/single-cell-transformer-papers

  23528

• WhirlFirst/somde

  Algorithm for finding gene spatial pattern based on Gaussian process accelerated by SOM

  Language:Jupyter Notebook65

• WhirlFirst/STEM

  A Method for Mapping Single-cell and Spatial Transcriptomics Data with Transfer Learning

  Language:Jupyter Notebook91

• labmlai/annotated_deep_learning_paper_implementations

  🧑‍🏫 60+ Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, sophia, ...), gans(cyclegan, stylegan2, ...), 🎮 reinforcement learning (ppo, dqn), capsnet, distillation, ... 🧠

  Language:Python55.6k5.7k

• OmicsML/awesome-foundation-model-single-cell-papers

  14520

• guott15/SPIRAL

  Language:Jupyter Notebook132

• hiyin/scopeplus

  Scope+: An open source generalizable architecture for single-cell atlases at sample and cell levels

  Language:HTML112

• itrewub/jh-notes

  1.1k328

• mims-harvard/GNNDelete

  General Strategy for Unlearning in Graph Neural Networks

  Language:Python3710

• joonspk-research/generative_agents

  Generative Agents: Interactive Simulacra of Human Behavior

  17.3k2.2k

• qiuyu96/CoDeF

  [CVPR 2024 Highlight] Official PyTorch implementation of CoDeF: Content Deformation Fields for Temporally Consistent Video Processing

  Language:Python4.8k388

• biomap-research/scFoundation

  Language:Jupyter Notebook25739

• chansigit/hitl-single-cell

  Human-in-the-loop Single-cell Analysis

  Language:Python21