This is an example RStudio Project set up to be somewhat reproducible, showing how data can (and should) be included within the Project Directory and how R Notebooks can be numbered in the order that they must be evaluated, with outputs going into numbered subdirectories of the outputs directory.
The outputs directory is not under version control, as its path is
included in the .gitignore file.
Running those files requires the ‘tidyverse’ package.
While it is not customary to keep R Notebook outputs under version
control, in this case, the files: 001-read-and-format.nb.html and
002-plot-data.nb.html are included in the repository.
This is because their typeset versions are included in a GitHub Pages web page, so that they may be viewed correctly on the web, if desired. Links to those are here: