/TrackTree

Nice visualization of timecourse data obtained from tracking dividing/splitting objects.

Primary LanguageJupyter Notebook

Track Tree - Epic Tree Timecourse Visualization

by Jonas Hartmann, Gilmour group, EMBL Heidelberg


Info:

This pipeline reads time course data of a tracked object that divides into multiple objects over time (for example a cell as observed with a fluorescence microscope and tracked by image analysis) and plots the track data as a tree, visualizing measurements as an outline and/or through coloring.

See About section in track_tree.ipynb for more information!


Example 1: Tree with outline and color to represent track measurements

Example Track Tree with color

Example 2: Example tree with two outlines to represent track measurements

Example Track Tree with double-outlines