William-Gardner-Biotech
Bioinformatics projects with a dash of personal projects and the occasional pizza recipe.
Pinned Repositories
Diary_Emotion_tracker
Personal Project for detecting emotion from diaries using nltk
embl-my-gbk
Convert a Genbank file with many extraneous Geneious annotations to EMBL format (even with of strict requirements as IPD)
EVTA
Evolutionary Variant Timepoint Analysis
FLIRTy
FLIRTy: Finding Loose Interactions and Rogue Targets. Bioinformatic tool to locate which primers are cross reacting in multiplex reactions.
Gene-mapping
Taking a single strand of DNA from the 5' to 3' direction in the form of a .txt file, the program will return all proteins found in the DNA. It will account for all possible reading frames and finally hash all the protein sequences to ensure user privacy.
Genes_of_Mice_n_Men
Which genes are conserved between Homo sapiens and Mus musculus and can be used to study human disease? Specifically, which genes can we study in a mouse model to research human cerebellum function and disease?
Github-stats
haploSC2
Nextflow pipeline for calling SARS-CoV-2 haplotypes for any amplicon in any primer scheme
KorfLab_Exam
Try and try until you succeed. You only fail if you stop trying.
long-infection-finder-collab
A place to store all programs and changes made to long-infection-finder that are still being developed. Somewhere between a fork and a branch.
William-Gardner-Biotech's Repositories
William-Gardner-Biotech/EVTA
Evolutionary Variant Timepoint Analysis
William-Gardner-Biotech/FLIRTy
FLIRTy: Finding Loose Interactions and Rogue Targets. Bioinformatic tool to locate which primers are cross reacting in multiplex reactions.
William-Gardner-Biotech/Diary_Emotion_tracker
Personal Project for detecting emotion from diaries using nltk
William-Gardner-Biotech/embl-my-gbk
Convert a Genbank file with many extraneous Geneious annotations to EMBL format (even with of strict requirements as IPD)
William-Gardner-Biotech/Gene-mapping
Taking a single strand of DNA from the 5' to 3' direction in the form of a .txt file, the program will return all proteins found in the DNA. It will account for all possible reading frames and finally hash all the protein sequences to ensure user privacy.
William-Gardner-Biotech/Genes_of_Mice_n_Men
Which genes are conserved between Homo sapiens and Mus musculus and can be used to study human disease? Specifically, which genes can we study in a mouse model to research human cerebellum function and disease?
William-Gardner-Biotech/Github-stats
William-Gardner-Biotech/haploSC2
Nextflow pipeline for calling SARS-CoV-2 haplotypes for any amplicon in any primer scheme
William-Gardner-Biotech/KorfLab_Exam
Try and try until you succeed. You only fail if you stop trying.
William-Gardner-Biotech/long-infection-finder-collab
A place to store all programs and changes made to long-infection-finder that are still being developed. Somewhere between a fork and a branch.
William-Gardner-Biotech/MACIC
Multiple Allelic Comparison to Identify Candidate genes
William-Gardner-Biotech/MSAoutID
This is a program that uses multiple sequence alignment data from hundreds of genomes to identify misidentified gene start sites.
William-Gardner-Biotech/NOVAR-MMAV
NOVAseq Reads-Metagenomic Mapping Against Viruses
William-Gardner-Biotech/Pizza
...because Github needs more pizza recipes and maybe some silly data science
William-Gardner-Biotech/proToggle
William-Gardner-Biotech/SARS-CoV-2-Haplotype-Phasing
A pipeline that can be used to haplotype phase SARS-CoV-2 amplicons from large wastewater and air samples. It will automate a Geneious workflow to reduce human error and ensure reproducibility of analyses.
William-Gardner-Biotech/William-Gardner-Biotech