Pinned Repositories
AlignmentProcessor
Prepares CDS fasta Alignments for use with several programs
Anole_expression
Understanding variation in squamate sex determination and sex chromosome evolution
ASEofBases
Allele Specific Expression method and pipeline for analysis
BioinformaticsIntroduction
Neoepitope_Prediction
PARdiversity
TumorHeterogeneity
Useful_code
XY_RNAseq
Alignment and filtering effects on RNAseq analysis on the X and Y chromosomes
XYalign
Identifying, understanding, and correcting technical biases on the sex chromosomes in next-generation sequencing data
Wilson Sayres Lab ARCHIVED Repositories's Repositories
WilsonSayresLab/BioinformaticsIntroduction
WilsonSayresLab/XYalign
Identifying, understanding, and correcting technical biases on the sex chromosomes in next-generation sequencing data
WilsonSayresLab/Useful_code
WilsonSayresLab/AlignmentProcessor
Prepares CDS fasta Alignments for use with several programs
WilsonSayresLab/ASEofBases
Allele Specific Expression method and pipeline for analysis
WilsonSayresLab/TumorHeterogeneity
WilsonSayresLab/XY_RNAseq
Alignment and filtering effects on RNAseq analysis on the X and Y chromosomes
WilsonSayresLab/Anole_expression
Understanding variation in squamate sex determination and sex chromosome evolution
WilsonSayresLab/Neoepitope_Prediction
WilsonSayresLab/PARdiversity
WilsonSayresLab/PopInf
Method to infer the major population (or populations) ancestry of a sample or set of samples.
WilsonSayresLab/SexDiffExpression
RNAseq analysis code, specifically focusing on sex differences in expression
WilsonSayresLab/TurkanaSelection
WilsonSayresLab/Coverage_BSP
How does reduced coverage affect demographic inference in Bayesian Skyline Plots
WilsonSayresLab/Diversity_simulations
WilsonSayresLab/eQTL
WilsonSayresLab/MMB_apes
Codes related to studying male mutation bias across apes
WilsonSayresLab/MMB_flies
WilsonSayresLab/myeloma
This repository contains the code used in the myeloma/selection project.
WilsonSayresLab/Nasonia
Wasp parent of origin effects
WilsonSayresLab/PcTF_differential_expression
Code for analyzing RNAseq data from cell lines expressing PcTF, and code for making figures
WilsonSayresLab/Placenta1
Reanalysis of preexisting placenta RNAseq data
WilsonSayresLab/Teaching_GeneticDrift
WilsonSayresLab/Y_diversity
Scripts for modeling and empirically calculating diversity on Y and mtDNA. Potentially to expand at a later date.