Wongolini
M.S. Biology, Microbiology B.S. and Mathematics B.S.. PhD student at Johns Hopkins University.
Johns Hopkins University
Pinned Repositories
aln_stats_prot
Script producing protein alignment variants statistics
COGS108_Repo
Krunk
CRISPRFinder
This is a group of scripts used to filter through large collections of sequences for the purpose of finding potential sgRNAs for CRISPR-cas9 systems amongst close homologs of antibiotic resistance genes.
examples
Example deep learning projects that use wandb's features.
kraken2
The second version of the Kraken taxonomic sequence classification system
Lectures-Fa19
Lecture files - Fall 2019
morbidostat_construction
Building Osterman Lab implementation of morbidostat
morbidostat_v2_construction
NicholasWong.github.io
Personal Website
Wongolini's Repositories
Wongolini/CRISPRFinder
This is a group of scripts used to filter through large collections of sequences for the purpose of finding potential sgRNAs for CRISPR-cas9 systems amongst close homologs of antibiotic resistance genes.
Wongolini/aln_stats_prot
Script producing protein alignment variants statistics
Wongolini/COGS108_Repo
Krunk
Wongolini/examples
Example deep learning projects that use wandb's features.
Wongolini/kraken2
The second version of the Kraken taxonomic sequence classification system
Wongolini/Lectures-Fa19
Lecture files - Fall 2019
Wongolini/morbidostat_construction
Building Osterman Lab implementation of morbidostat
Wongolini/morbidostat_v2_construction
Wongolini/NicholasWong.github.io
Personal Website
Wongolini/patric_gto_tools
Scripts to convert PATRIC gto format to other formats
Wongolini/pygame
pygame (the library) is a Free and Open Source python programming language library for making multimedia applications like games built on top of the excellent SDL library. C, Python, Native, OpenGL.
Wongolini/qbb2022-answers
Wongolini/RBSEEK_vis
visualize rbseq sequencing data after rbseq perl pipeline
Wongolini/RBseq_py
Track fitness of deletion mutants with a randomly barcoded random insertion library
Wongolini/SequenceToolsGabo
Programs used in the lab for various tasks
Wongolini/Simulating_Phage_Bacteria_Adsporption_Kinetics
A dynamic and stochastic simulation of viral phage infections of bacteria.
Wongolini/subpop_decompose_gd
Decomposition of population deep-sequencing data into subpopulations using gradient descend algorithm.
Wongolini/subpop_decompose_mip
Decompose observed variants to subpopulations using mixed integer programming with pulp package,
Wongolini/TNSeq
Fork of https://bitbucket.org/berkeleylab/feba/src/master/
Wongolini/Wongolini.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes