Pinned Repositories
ecDNA_immune
Extrachromosomal DNA is associated with decreased immune cell infiltration and antigen presentation, represents a potential cancer immune evasion mechanism
Immunoediting
Pan-cancer quantification of neoantigen-mediated immunoediting in cancer evolution
Neodb
Shiny Web Server and Database for Neoantigen discovery
PC_CNA_signature
Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/
Seq2Neo
Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction
TCfinder
TLimmuno2
TLimmuno2: predicting MHC class II antigen immunogenicity through transfer learning
tumor-immunogenicity-score
TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
Workshop
课题组每周研讨会
XSLab-docs
上科大刘雪松课题组基因组学分析传承与分享知识库
XSLiuLab's Repositories
XSLiuLab/Workshop
课题组每周研讨会
XSLiuLab/tumor-immunogenicity-score
TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
XSLiuLab/Seq2Neo
Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction
XSLiuLab/XSLab-docs
上科大刘雪松课题组基因组学分析传承与分享知识库
XSLiuLab/PC_CNA_signature
Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/
XSLiuLab/Immunoediting
Pan-cancer quantification of neoantigen-mediated immunoediting in cancer evolution
XSLiuLab/TCfinder
XSLiuLab/ecDNA_immune
Extrachromosomal DNA is associated with decreased immune cell infiltration and antigen presentation, represents a potential cancer immune evasion mechanism
XSLiuLab/Noncoding-code-2020
CDC20 noncoding project
XSLiuLab/TLimmuno2
TLimmuno2: predicting MHC class II antigen immunogenicity through transfer learning
XSLiuLab/XSLiuLab.github.io
课题组网站
XSLiuLab/neoantigen_depletion
neoantigen depletion checking and detection
XSLiuLab/Pan-cancer_CNA_signature
https://xsliulab.github.io/Pan-cancer_CNA_signature/
XSLiuLab/MethyDeep
XSLiuLab/Neodb
Shiny Web Server and Database for Neoantigen discovery
XSLiuLab/HRDCNA
A robust homologous recombination deficiency predictor based on copy number alteration features
XSLiuLab/hypoxia_target
Deep learning reveals the metabolic vulnerability of hypoxic tumor cells and the critical function of FLAD1 mediated tumor hypoxia adaption
XSLiuLab/InterpretationAnalysisHRDCNA
An interpretation analysis of copy number alteration features in pan-cancer homologous recombination deficiency prediction and biology
XSLiuLab/CDC20
XSLiuLab/DeepMeta
Precise metabolic dependencies of cancer through deep learning
XSLiuLab/FoLST2021-PancancerCNAsig-Poster
A poster showing Pancancer CNA signature project at FoLST2021, ShanghaiTech University.https://xsliulab.github.io/FoLST2021-PancancerCNAsig-Poster/
XSLiuLab/Immunoediting_response_letter_CR
XSLiuLab/noncoding-cdc20
XSLiuLab/Pep2TCR
Pep2TCR: a novel deep learning method for CD4 TCR specificity prediction
XSLiuLab/PromoterMutSpot
XSLiuLab/CancerBiology
Support materials for 《Cancer Biology》，Shanghaitech University
XSLiuLab/CNAfingerprint
XSLiuLab/CNAfingerprint_demo
XSLiuLab/FoLST2021-Immunediting-Poster
XSLiuLab/single-cell-CNA-signature
This repository provides the analysis reports, code and data for readers who are insterest in this project and make it easier to reproduce the whole analysis procedure.