/Arsenic_Toxicity_Single-Cell_Multi-Omics_Profiling

Primary LanguageEuphoria

Codes for paper: Unveiling the Impact of Arsenic Toxicity on Immune Cells in Atherosclerotic Plaques: Insights from Single-Cell Multi-Omics Profiling

  1. Cellchat task's code for scRNA-seq data can be found in cellchet folder.
  2. Sdrem task's code for scRNA-seq data can be found in sdrem folder.
  3. Velocity task's code for scRNA-seq data can be found in velocyto folder.
  4. The rest scRNA-seq tasks's code (include preprocessing) can be found in Single_cell_RNA_seq_preocessing.ipynb.
  5. Tasks for scATAC-seq can be found in cistopic folder.