title

library name

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pydoxtools (Python Library)

pydoxtools

AI-Composition

ETL

pipelines

knowledge graphs

🎩✨📄 pydoxtools (Python Library) 🎩✨📄

Documentation

If you have any problems or questions, please create a github issue. So that other poeple who might want to use it can see the potential solution!

Summary

Pydoxtools is a library that provides a sophisticated interface for reading and writing documents, designed to work with AI models such as GPT, LLama2, and a variety of models on Huggingface. It offers functionalities such as:b

Pipeline management
Integration with AI (LLMs and more) models
low-resource (PDF) table extraction without configuration and expensive layout detection algorithms!
Knowledge base extraction as a one-liner
Document analysis and question-answering
Support for most of todays document formats
Vector index Creation
Entity, address identification and more
List and keyword extraction
Data normalization, translation, and cleaning

The library allows for the creation of complex extraction pipelines for batch-processing of documents by defining them as a lazily-executed graph.

Installation

Installing from GitHub

While pydoxtools can already be installed through pip, due to the many updates coming in right now, it is currently recommended to use the latest version from GitHub as follows:

pip install -U "pydoxtools[etl,inference] @ git+https://github.com/xyntopia/pydoxtools.git"

Installing from PyPI

Pydoxtools can also be installed through pip, which will become the recommended method once it becomes more stable:

pip install -U pydoxtools[etl,inference]

For loading additional file formats (docx, odt, epub), OCR and other options, check out the additional > Installation Options <.

🚀 Teaser 🚀

Experience a new level of convenience and efficiency in handling documents with Pydoxtools, and reimagine your data extraction pipelines!

In this teaser, we'll demonstrate how to create a document, extract tables, and ask questions using AI models:

import pydoxtools as pdx

# Create a document from various sources: file, string, bytestring, file-like object, or URL
doc = pdx.Document("https://www.raspberrypi.org/app/uploads/2012/12/quick-start-guide-v1.1.pdf")

# List available extraction functions
print(doc.x_funcs)

# get all tables from a single document:
print(doc.tables)

# Extract the first 20 tables that we can find in a directory (this might take a while,
# make sure, to only choose a small directory for testing purposes)
docs = pdx.DocumentBag("./my_directory_with_documents", forgiving_extracts=True)
print(docs.bag_apply(["tables_df", "filename"]).take(20))

# Ask a question about the documents using a local Q&A model
print(doc.answers(["how much ram does it have?"]))
# Or only ask about the documents tables (or any other extracted information):
print(doc.answers(["how much ram does it have?"], "tables"))

# To use ChatGPT for question-answering, set the API key as an environment variable:
# OPENAI_API_KEY="sk ...."
# Then, ask questions about the document using ChatGPT
print(doc.chat_answers(["What is the target group of this document?"])[0].content)
print(doc.chat_answers(["Answer if a 5-year old would be able to follow these instructions?"])[0].content)

With Pydoxtools, you can easily access and process your documents, perform various extractions, and utilize AI models for more advanced analysis.

Supported File Formats

Pydoxtools already supports loading from a large variety of different sources:

Documents from URLs,
pdf, html, docx, doc, odt, markdwn, rtf, epub, mediawiki
everything supported by pandoc,
images (png, jpg, bmp, tiff etc...),
And some "native-python" dataformats: PIL.Image.Image, <class 'dict'>, <class 'list'>
data formats: yaml (json in progress)
And more!

Some Features in More Detail

Large Pipelines

Pydoxtools' main feature is the ability to mix LLMs and other AI models in large, composable, and customizable pipelines. Using pipelines comes with the slight disadvantage that it can be more challenging to add type hints to the code. However, using pipelines decouples all parts of your code, allowing all operators to work independently. This makes it easy to run the pipeline in a distributed setting for big data and enables easy, lazy evaluation. Additionally, mixing different LLM logics together becomes much easier.

Check out how Pydoxtools' Document class mixes pipelines for each individual file type:

Every node in an ellipse can be called as an attribute of the document-analysis pipeline.
Every execution path is lazily executed throughout the entire graph.
Every node is cached by default (but can be turned off).
Every piece of this pipeline can be replaced by a customized version.

As an example, consider this pipeline for *.png images from the repository, which includes OCR, keyword extraction, vectorization, and more:

Pipelines can be mixed, partially overwritten, and extended, giving you a lot of possibilities to extend and adapt the functionality for your specific use case.

To learn more about Pydoxtools' large pipelines feature, please refer to the documentation.

Pipeline Configuration

Pipelines can be configured. For example the local model used for question answering can be selected like this:

doc = Document(fobj="./data/PFR-PR23_BAT-110__V1.00_.pdf")
.config(qam_model_id='bert-large-uncased-whole-word-masking-finetuned-squad')

where "qam_model_id" can be any model from huggingface for question answering.

You can get a list of configuration options like this:

doc.configuration

# >> will give you something like this:
# {'spacy_model_size': 'md',
# 'spacy_model': 'auto',
# 'use_clean_text_for_spacy': True,
# 'coreference_method': 'fast',
# 'graph_debug_context_size': 0,
# 'vectorizer_model': 'sentence-transformers/all-MiniLM-L6-v2',
# 'vectorizer_only_tokenizer': False,
# 'vectorizer_overlap_ratio': 0.1,
# 'min_size_text_segment': 256,
# 'max_size_text_segment': 512,
# 'text_segment_overlap': 0.3,
# 'max_text_segment_num': 100,
# 'top_k_text_rank_keywords': 5,
# 'top_k_text_rank_sentences': 5,
# 'summarizer_model': 'sshleifer/distilbart-cnn-12-6',
# 'summarizer_token_overlap': 50,
# 'summarizer_max_text_len': 200,
# 'qam_model_id': 'deepset/minilm-uncased-squad2',
# 'chat_model_id': 'gpt-3.5-turbo',
# 'image_dpi': 216,
# 'ocr_lang': 'auto',
# 'ocr_on': True}

For more information check the -> documentation:

PDF Table Extraction Algorithms

The library features its own sophisticated Table extraction algorithm which is benchmarked against a large pdf table dataset. In contrast to how most "classical" table extraction algorithms work, it doesn't require:

extensive configuration
no expensive deep neural networks for table area recognition which need a GPU and a lot of memory/CPU requirements

This makes it possible to run analysis on PDF files with pydoxtools on CPU with very limited resources!

TODO: Describe more of the features here...

Use Cases

create new documents from unstructured information
analyze documents using any model from huggingface
analyze documents using a custom model
download a pdf from URL
generate document keywords
extract tables
download document from URL "manually" and then feed to document
extract addresses
extract addresses and use this information for the qam
ingest documents into a vector db

Installation Options

If you simply want to get going, you can install the following libraries on your system which will do evrything for you:

sudo apt-get install tesseract-ocr tesseract-ocr-deu tesseract-ocr-fra tesseract-ocr-eng tesseract-ocr-spa \
                     poppler-utils graphviz graphviz-dev \
sudo apt-get install pandoc
# OR (for getting the newest version with all features)
# cd /tmp
# wget https://github.com/jgm/pandoc/releases/download/2.19.2/pandoc-2.19.2-1-amd64.deb
# dpkg -i pandoc-2.19.2-1-amd64.deb

Below are some explanation what the different

Supporting .docx, .odt, *.epub

In order to be able to load docx, odt and rtf files, you have to install pandoc. Right now, the python pandoc library does not work with pandoc version > 3.0.0. It is therefore recommended to install a version from here for your OS:

https://github.com/jgm/pandoc/releases/tag/2.19.2

Image OCR Support

Pydoxtools can automatically analyze images as well, makin use of OCR. In order to be able to use this, install tesseract on your system:

Under linux this looks like the following:

sudo apt-get update && sudo apt-get tesseract-ocr
# install tesseract languages 
# Display a list of all Tesseract language packs:
#   apt-cache search tesseract-ocr
# install all languages:
# sudo apt install tesseract-ocr-*
# install only german, french, english, spanish language packs
sudo apt install tesseract-ocr-deu tesseract-ocr-fra tesseract-ocr-eng tesseract-ocr-spa

pdf image rendering

For pdf rendering, Pydoxtools makes use of a library "poppler" which needs to be installed on your system. Under linux, this looks like the following:

sudo apt-get install poppler-utils

Graphviz

For visualizing the document logic, you need to install graphviz on your system. Under linux, this looks like the following:

sudo apt-get install graphviz graphviz-dev

Development

--> see

License

This project is licensed under the terms of MIT license.

You can check the compatibility using the following tool in a venv environment in a production setting:

pip install pip-licenses
pip-licenses | grep -Ev 'MIT License|BSD License|Apache Software License|Python Software Foundation License|Apache 2.0|MIT|Apache License 2.0|hnswlib|Pillow|new BSD|BSD'

Dependencies

Here is a list of Libraries, that this project is based on:

list

Changelog

changelog

Xyntopia/pydoxtools