YANWF2020

YANWF2020's Stars

• apcamargo/genomad

  geNomad: Identification of mobile genetic elements

  Language:Python20319

• Matteopaluh/KEMET

  KEGG Module Evaluation Tool

  Language:Python276

• chunxiao-dcx/QSAP

  Language:Perl11

• xinehc/args_oap

  ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Database

  Language:Python4611

• jameslz/flye-kit

  long reads assembly with Flye and Pilon

  Language:Perl4

• karkman/crAssphage_project

  Source code for the crAssphage project

  Language:TeX4642

• junjunlab/jjAnno

  An annotation package for ggplot plot

  Language:R1108

• Hydro3639/NanoPhase

  Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and short reads (hybrid strategy)

  Language:Shell261

• LiguanLi/SourceTrack

  Language:R9

• trinityrnaseq/trinityrnaseq

  Trinity RNA-Seq de novo transcriptome assembly

  Language:Perl843320

• Hy4m/linkET

  Everything is Linkable

  Language:R15341

• yuboer/genome-centric-portrait-of-cellulose-hydrolysis

  This pipeline is developed to interpret MAGs on the specific function niche of cellulose hydrolysis

  Language:PostScript31

• deweylab/RSEM

  RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

  Language:C++424118

• BenLangmead/bowtie2

  A fast and sensitive gapped read aligner

  Language:C++686161

• geronimp/enrichM

  Toolbox for comparative genomics of MAGs

  Language:Python8222

• Pong2021/Research-Methods-of-Microbial-Biogeography

  Language:R81

• tseemann/prokka

  :zap: :aquarius: Rapid prokaryotic genome annotation

  Language:Perl857229

• biofuture/Ublastx_stageone

  This is the source code for multisamples ARGs profiling using SARG2.0 database

  Language:HTML4642

• bxlab/metaWRAP

  MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

  Language:Shell407190