This repository contains code for (1) genotype imputation from low-coverage sequencing and (2) recreate down-sampling and imputation accuracy analyses from Watowich et al. 2023 (in press).
Citation: Watowich, M.M., Chiou, K.L., Graves B., Montague, M.J., Brent, L.J.N., Higham, J.P., Horvath, J.E., Lu, A., Martinez, M.I., Platt, M.L., Schneider-Crease, I.A., Lea, A.J., Snyder-Mackler, N. (2023). Best practices for genotype imputation from low-coverage sequencing data in natural populations. In press.
Please see Tutorial/ for the guide to implementing imputation analyses in natural populations
Please see Manuscript_analyses/ for analyses for Watowich et al. 2023 (in press)