Pinned Repositories
AlphaFold3
Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
Badread
a long read simulator that can imitate many types of read problems
bindPredict
Prediction of binding residues for metal ions, nucleic acids, and small molecules.
bio_embeddings
Get protein embeddings from protein sequences
ColabDesign
Making Protein Design accessible to all via Google Colab!
DiffBindFR
Diffusion model based protein-ligand flexible docking method
DiffDock
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
ESP
FLAPP
heme_binder_diffusion
Yang-Wang-2020's Repositories
Yang-Wang-2020/AlphaFold3
Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
Yang-Wang-2020/Badread
a long read simulator that can imitate many types of read problems
Yang-Wang-2020/bindPredict
Prediction of binding residues for metal ions, nucleic acids, and small molecules.
Yang-Wang-2020/bio_embeddings
Get protein embeddings from protein sequences
Yang-Wang-2020/ColabDesign
Making Protein Design accessible to all via Google Colab!
Yang-Wang-2020/DiffBindFR
Diffusion model based protein-ligand flexible docking method
Yang-Wang-2020/DiffDock
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
Yang-Wang-2020/ESP
Yang-Wang-2020/FLAPP
Yang-Wang-2020/heme_binder_diffusion
Yang-Wang-2020/Machine-learning-for-proteins
Listing of papers about machine learning for proteins.
Yang-Wang-2020/ncbi-genome-download
Scripts to download genomes from the NCBI FTP servers
Yang-Wang-2020/NeuralPLexer
NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model
Yang-Wang-2020/ProSmith
Yang-Wang-2020/ProtTrans
ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.
Yang-Wang-2020/rf_diffusion_all_atom
Public RFDiffusionAA repo
Yang-Wang-2020/RFdiffusion_stable
Code for running RFdiffusion
Yang-Wang-2020/RoseTTAFold-All-Atom